KEGG   Amyelois transitella (navel orangeworm): 106142870
Entry
106142870         CDS       T09957                                 
Name
(RefSeq) exosome complex exonuclease RRP44
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106142870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106142870
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     106142870
SSDB
Motif
Pfam: RNB OB_Dis3 PIN_4 Rrp44_CSD1 CSD2 Dis3l2_C_term Rrp44_S1
Other DBs
NCBI-GeneID: 106142870
NCBI-ProteinID: XP_060801952
LinkDB
Position
9:join(8208563..8208616,8208700..8209028,8209111..8209307,8209846..8210072,8210334..8210616,8211214..8211384,8211845..8211960,8212517..8212772,8213106..8213230,8213509..8213679,8214002..8214208,8214466..8214686,8220034..8220202,8220417..8220557,8220959..8221222)
AA seq 976 aa
MWTTKTFLTKTKRGNILKIVREHYLRDDLLCGSAACSICPHKDDEFVLDSTPECHCALFD
YPHYLILDTNVVLHQIDVLEEDAIINVIILQTVLEEVKHQNTAIFQRLLEIIGNKKRKFY
SFVNEHHKDTYVERKPGEKANDRNDRAIRKAAQWYASHISANNVGGQFPRIILLTDDENN
RKIAQEEGIVCCSVKDYIENVSGFPGLVDKLSKNVIPESCSKDALYPAHLTPSQVHTGIR
SGKLHQGTFHASRDNFLEGTANVNGFEKPILLQGHIGINRAVDGDIVAIELFPEEDWRRP
SDIVLEDKAEDPGDLLEEESTLLNVMKPVDNKDDEITPTGKVVGIIRRKWRQYCGILMPS
KFPGATRHLFTPAEKRIPRVRIESRQSEILASQRILVALDSWPRNSRYPLGHFVRALGPI
GDKDAENEVILLEHDVPHARFSEAVLACLPPDDWTIPPEEIKKRVDLRSITICSVDPPGC
TDIDDALHARPLPGTTSDGLKRYEVGVHIADVTYFVRPDTALDKEAASRSTTVYLVDRRI
DMVPELLSSNLCSLRGGEERLAFSCVWEIDENANVLATKFHKSVIKSKAAMTYEEAQIAI
DDESRKDDIANSLRTLNALAKKLKRKRLDNGALLLASPEIRFQVDSETHDPVEVQAKKIM
DTNSMVEEFMLLANVSVAEKLCQEFPQCALLRRHPPPPPANFHTFLKAARQQGFELDVST
NKSFSKSLDEAVIPGRPFFNTLLRIMATRCMQQAVYFTSGTKTQDEYYHYGLACPIYTHF
TSPIRRYADVIVHRLLAACVGADVTHASLLDGRRADSTCDNLNYRHRQAQYAGRASVALN
THILFKNRVEIESAVVLSVKRNALQVLIPKYGLEGPLYLPADMFTYNEEEHLQICGDVTL
KTFDELTVRLSLDSTNLQHRKLVFQLVKPHVPGFSFVPEETEKTSKEEQMQVDEIPQKKR
KDEDKHKSSKKKSKKK
NT seq 2931 nt   +upstreamnt  +downstreamnt
atgtggacaacaaagacatttttgactaaaacaaagcgcggtaatattttaaaaattgtc
agagagcattaccttcgcgatgatttgctttgtggatcggctgcatgtagtatttgccct
cacaaggatgacgaatttgttttggactcaactccagagtgtcactgtgctttatttgac
tatccacactacttgatccttgacaccaatgtggtcctccaccagattgacgttcttgag
gaagatgccattataaatgttattattttacaaaccgttctagaggaagtaaaacatcaa
aatactgcaattttccaacgtcttcttgaaattattggaaataagaaaagaaaattttat
tcttttgttaatgaacatcataaagatacttacgtggagcggaagccaggggaaaaggcc
aatgatagaaacgacagggctatacgtaaagctgctcagtggtatgcttctcacatatcc
gcaaacaatgttggtggccagttcccaaggatcatactgcttacagatgacgagaataac
agaaagatagctcaagaagaggggattgtttgctgttctgtaaaagactacattgaaaat
gtgtctggtttccctgggcttgtggacaagttgtcgaaaaatgtgataccagaaagctgt
tccaaggatgccctgtaccctgcacatttgactccctctcaggttcacactggcattagg
agtgggaagcttcaccaggggactttccatgcatcccgagataactttcttgaaggcact
gccaatgtcaatggatttgaaaaaccaattttactccaaggccacataggaatcaaccgt
gctgtggatggtgatatagtggccattgaactgtttcctgaggaagattggaggaggccc
agtgatatagtccttgaggacaaggctgaagaccctggagatctcttggaagaggaatct
acgcttttgaatgtgatgaaacctgttgacaataaagatgatgaaataacaccaactgga
aaggtggttggaattataaggaggaaatggagacagtattgtggcattctgatgcccagc
aagtttccaggtgcaacacgtcacttgttcactccggctgagaagcgtatcccgcgcgtg
cgcatcgagagtcgtcagagtgagatcttagcgtcgcagcgtatccttgtcgcgttggac
tcatggccgaggaatagccgatacccgcttggacattttgttcgggcgttgggacctatt
ggcgacaaagatgcagaaaacgaagtaatattgctcgagcacgacgttccacacgcgagg
ttcagtgaagccgtgctcgcttgcctgccgcccgatgactggactataccgcctgaggaa
ataaagaagcgtgtagacctccgttctatcacgatttgttccgtcgatccacctggctgt
acagatattgacgacgctttacacgcccggcccctaccagggaccacttcagacggcctc
aaacgatacgaagtgggagtgcatatcgcagacgtgacgtatttcgtgaggcccgatacc
gcattagataaggaggccgcttcgagaagtactaccgtttatttggttgatagaagaatc
gatatggtgcctgaacttctgagttcaaacctgtgttctcttcgtggcggagaggagcgg
ctagcattttcctgcgtctgggagatagacgagaatgctaacgtacttgctacgaagttc
cataagagtgttataaagtcaaaagcggctatgacatacgaagaagcgcagatagcaatc
gacgacgagtcccgtaaggacgacatcgcgaattcgcttcgaacgctcaatgccctcgcc
aagaaattgaagcggaagcgcttggacaacggtgcgcttttgctcgcttcgcctgaaata
cgattccaggtggactccgaaacccacgaccctgtagaagtgcaagcgaagaagataatg
gacacgaactctatggtggaagagttcatgttgttggctaacgtgagcgtggcggagaag
ctttgccaagagttcccgcagtgcgcgttattacgtcgccatccaccccctccgccggct
aatttccacactttcctgaaggctgctaggcaacagggcttcgaactggacgtgtcgacc
aacaaatcgttctccaaatctctagacgaggcggtgatacccgggcgtccgttcttcaac
acgttacttcgtataatggcgacacgttgtatgcaacaagccgtttactttacaagtggt
acaaaaactcaagatgaatattaccattatggacttgcgtgcccaatttatacgcatttc
acgtcgccaataaggagatacgctgatgtgatagtgcaccgcctgctggccgcatgcgtc
ggcgccgacgtgacgcacgccagcctgctggacggccggcgcgcggacagcacgtgcgac
aacctcaactatcgccacagacaggcgcagtacgccggccgtgcttccgtcgctcttaac
acacatattctattcaagaaccgcgtggagatagaatcagcggttgtattgtcggtaaaa
cggaacgcattgcaagtgctcataccaaagtatgggctggaaggacctttatatttacct
gctgacatgttcacgtataacgaagaggaacaccttcaaatatgtggcgatgtaactttg
aaaacgttcgatgaactaacagttcgcctcagcctcgacagtacaaacttgcaacatcgc
aaactagtcttccaactagtcaaaccacacgtcccaggattcagcttcgttccagaggaa
actgagaaaacttctaaggaagaacagatgcaagtggatgagattccacagaaaaagagg
aaagacgaggataagcataagagtagcaagaagaaatcaaagaagaaatag

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