Amyelois transitella (navel orangeworm): 106143172
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Entry
106143172 CDS
T09957
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atra03000
]
106143172
Transcription factors [BR:
atra03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106143172
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
106143172
NCBI-ProteinID:
XP_013200644
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Position
2:3939193..3940293
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AA seq
366 aa
AA seq
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MLTLESDLKGGSLHATVPPHHALQHGYGSLGALGGMMALPQQPPLSQHQQMQHQHHQQIP
QHHQQPTNQHHQPPNNNNNTTSKNSNADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEI
SKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLAKKQDKYPLGGG
ALLGGGEPQRANAPVAQQPRDVYQMTTNGYMPNGYMMHDPSAYQQQAYGYPRYDVSQMQQ
GSYGGGYYGGQGSPYLPQQPPSPSAYGLGPGSPGNYALPPSCASHSPSGSSAKSEPVSPG
PPGMKREFVAHEQQMKREFVPHSHPHEQLSMKREYGQQELSHIINMYHVPDEQRYAAAGE
RAMPLI
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgttggagtcggacctcaagggcggcagcctgcacgccacggtgccgccgcac
cacgcgctccagcacggctacggctcgctgggcgcgctcggcggcatgatggccctgccg
cagcagccgccgcttagccaacatcaacagatgcaacatcaacaccaccaacagattcct
cagcatcaccagcagccgacaaatcaacatcatcagccaccgaacaacaacaacaatact
accagcaaaaactcaaacgcagaccgtgtcaagcggcctatgaatgctttcatggtgtgg
tcgcgagggcagcgcaggaagatggcatcggataaccctaaaatgcacaattcggaaatt
tcgaaacgtctcggtgcacagtggaaggacctctctgaatcagaaaaaaggccgtttatc
gatgaagcgaagagactacgagctgttcatatgaaagaacatccagattacaaatacaga
ccacgaaggaagacgaagacccttgctaagaaacaggacaaatatccgctcggtggcgga
gcactactaggtggcggcgagccgcagcgtgcgaacgcgcccgtggcccagcagccgcga
gacgtctatcagatgacaacaaacggatacatgccaaatggatatatgatgcacgatccg
agtgcttaccaacagcaggcttacggatatccgcgctacgacgtctcacaaatgcagcaa
ggaagttacggcggcggatactatggcgggcagggatcaccatatctgccgcagcagcca
ccttctccgtcagcttacggcctcgggccgggctcgccgggcaactacgcgctgccgccg
tcgtgcgcctcgcactcgccgagcggctcgtccgccaagtcggagccggtgtcgccgggc
ccgcctggcatgaagcgcgagttcgtggcccacgaacaacagatgaaacgcgagttcgtg
ccgcactctcacccgcacgagcagctgtccatgaaacgtgaatacggacaacaggaactg
agccacatcatcaacatgtaccacgtcccggacgagcagcggtacgccgccgccggcgag
cgcgccatgccgctcatctga
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