Amyelois transitella (navel orangeworm): 106143308
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Entry
106143308 CDS
T09957
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 27C isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106143308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106143308
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106143308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
106143308
NCBI-ProteinID:
XP_060804512
LinkDB
All DBs
Position
16:complement(join(1683236..1683360,1691730..1691811,1695758..1695930,1696448..1696537,1698012..1698205,1699735..1699949,1700420..1700502,1700961..1701151,1707484..1707687,1710596..1710633))
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AA seq
464 aa
AA seq
DB search
MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGDVIDCVVMKNSESGRSRGFGFVT
FADPTLVNMVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNITETDLR
VFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDELSVERVTQEHFINLNGKQVEIKRAEP
RDGSGKLGSGGGGMGGGMSAPGDAPQAGQWGPPAAPINMIQGHNGQMGGPPINMPMAGPN
IMQGYQGWGTSPGQTSYAGYGAAGAGAGPGNYQGWGAPPAPQAPPHAPAWPATNNYTQQP
PAQGYGSYANYSSAPAGASAGGSWTNWNMPQNSNSTGSGSYVPLSEGGEMYGRGGGAGGT
SAPALSGALSSAALSKSSSADYSTYQQYPPAYQQDQGSSYGGGGSRAYGAGSDYHAAPAT
QPPGDDYEYTGGSGDGYQRSSKRSYHGTSSSGTASASSYHPYRR
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatgaatccagacatggacgatgacgagaagggaaaattattcgtcggtgggcta
tcatgggaaacgtcgcaggagaacctgcagcgctacttctcacgatacggcgacgtgatc
gactgtgtcgtgatgaagaacagcgagtccgggcggtctaggggattcggcttcgtcacc
tttgctgaccctaccctggtcaacatggtgttgcagaatggaccgcaccagttggatgga
aggaccatcgatccaaagccatgcaacccgcgcaccctgcagaaacccaagcgtgggggc
ggataccctaaggtattccttggaggtctcccgtccaacatcacagagacagatcttagg
gtgttctttggccgctacggcaaggtgatggaggtggtcatcatgtatgaccaggaaaag
aagaaatctagaggttttggcttcctgtcatttgaagacgagctctccgtcgagagagtg
acacaggagcacttcattaacctcaatggaaagcaggtggagatcaagcgcgccgagccc
cgcgacggctcgggcaagctgggctcgggcggcggcggcatgggcggcggcatgagcgcg
ccgggcgacgcgccgcaggccggccagtggggcccgcccgcggccccgatcaacatgatc
caggggcacaacgggcagatgggcggcccccccatcaacatgccaatggcgggccctaac
atcatgcaagggtaccaaggctgggggacctcccccgggcagacgtcgtacgcgggctac
ggcgcggccggcgcaggcgcgggccccggcaactaccagggctggggcgcgccgcccgcg
ccgcaggcgccgccccacgcgcccgcctggcccgccaccaacaactacacgcagcagccg
ccggcgcagggctacggcagctatgctaactatagttctgccccagccggtgcgtcagca
ggcggcagctggacaaattggaacatgccgcagaattctaactctaccggttctggatcg
tacgtgccgctgtcggagggcggcgagatgtacgggcgcggcggcggcgcgggcggcacg
tcggcgcccgcgctgtcgggcgcgctgtcgtcggcggcgctcagcaagtcgtcgtccgcc
gactactccacctaccagcagtacccgcccgcctaccagcaggaccagggctcctcgtac
ggcggcggcggctcgcgcgcgtacggcgccggctccgactaccacgccgcgcccgccacg
caacctccaggtgacgattatgaatacaccggaggctcgggcgatggataccaaaggtca
tcgaaacggagctaccacggcacttcttcaagcggcactgcatcggcatcttcttaccat
ccctataggcgttaa
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