Amyelois transitella (navel orangeworm): 106143671
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Entry
106143671 CDS
T09957
Name
(RefSeq) transcription factor SOX-21
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atra03000
]
106143671
Transcription factors [BR:
atra03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106143671
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
106143671
NCBI-ProteinID:
XP_013201259
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All DBs
Position
2:complement(join(12392646..12393098,12399838..12399980,12414292..12414486,12425646..12425899,12437986..12437990))
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AA seq
349 aa
AA seq
DB search
MSAAGAMCDRTGFGGSMGHFPMGPMSAMGAIGSMGSITMNGQQTKKSPEEHIKRPMNAFM
VWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEDEKRPFIDEAKRLRAMHMKEHPDYK
YRPRRKPKTLRKEGYPYSIPYPSVPMDALRAGMAGGGMGQAMGGYYGAAYGPLGASMAAA
AAAAAQQNAISAALTPNPQVASSMDMSKYSIEAEKYRSYGMYPDPSRGYLDSAALSKAYM
YMDQQQQRSYPMDISKMYSEASAAAMAGLSSAVTSAPSSLSPRSPTDSPDVTGKPQERPE
GSSSSGSNPSPPLPYYQGSSSLLMPQYPGQYTQGTQSGSEFRRPLTVIF
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgctggcgcgatgtgcgaccggaccggcttcggagggtccatgggtcacttc
cccatggggcccatgtctgccatgggggccatcgggagcatgggctccatcaccatgaac
ggccagcagacgaagaagtcccccgaggaacatataaagaggccaatgaacgcgttcatg
gtctggtcccggttacagaggagaaagatagcccaggacaacccgaagatgcacaattct
gagatctccaaacgattaggggccgaatggaaactcctcacagaagacgagaagaggcca
ttcatcgatgaagccaagcgcctccgggctatgcacatgaaggaacaccctgattacaag
taccggccgagaaggaaacccaagaccttgcggaaggaagggtacccttactcgattccg
taccccagcgtacccatggatgctttgagagctggcatggccggaggcggtatgggtcaa
gcgatgggcggttactacggggcagcatacggcccgctcggagccagcatggcggcggcg
gcggctgcggcggcgcaacagaatgccatctcggcagccttgactcctaaccctcaggtc
gcgtcatcaatggacatgtcgaaatactccatcgaggctgagaaatacaggagttacggc
atgtatcccgacccctcgcgaggctacctggactcggctgcgttgtccaaagcctacatg
tatatggaccagcagcaacagcggtcatatcccatggacatcagtaaaatgtactctgaa
gcgtcggcggcggccatggcaggtctcagctcagctgtgacttcagcgccgtccagtttg
tccccacgctcgcctactgactcccctgacgtcacaggcaagccgcaagagcgaccagaa
ggcagctcctcctccgggtctaacccttccccgccccttccctactatcaaggctcctcg
agccttctaatgccccaataccctggtcagtacacgcagggaacccaaagcggttcggag
ttcaggaggccattgactgttatattctga
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