Amyelois transitella (navel orangeworm): 132902641
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Entry
132902641 CDS
T09957
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132902641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atra03041
]
132902641
Spliceosome [BR:
atra03041
]
Complex B
Other components
Prp19-related factors
132902641
Complex C
132902641
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
RRM_YTH1
zf_CCCH_4
RRM_occluded
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH
RRM_3
RRM_PARP14_3
Nup35_RRM_2
zf-CCCH_10
RRM_7
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
132902641
NCBI-ProteinID:
XP_060804563
LinkDB
All DBs
Position
16:complement(join(3139083..3139280,3139501..3139613,3139816..3139958,3140206..3140379,3140497..3140990,3141141..3141194,3141295..3141348))
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AA seq
409 aa
AA seq
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MAVSKTTNTYNRQNWEDSDFPILCQTCLGDNPYVRMTKEKHGKECKICVRPFTVFRWCPG
SRMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKIQDDLPRNEVNKEYYIQN
LDSQMSKCDASQPSNSALKSKGASDLLSRLARTAPYYKRNRPHVCSFWVKGECRRGEECP
YRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMRRAAAMPALLPPEDNTVTTLYVGNLP
DNINEEELRGHFYQYGEIRSVTLVSRAQCAFVQYTTRSAAEHAAEKTFNRLVIGEKRLTI
KWGKSQGRQGANEHNDMAPRLEPVPGLPGTLPPPPAFLHSFPPQMQPPPNRTNDFFNLHH
YGGPGWPAWVGPPMGPGAPPPAPAGHHYPSQDPSRLGAHAHANALRTQC
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcagtttcgaagactacgaacacctacaatcgacaaaattgggaagattctgacttc
ccgatattatgtcagacgtgtttgggcgataacccatacgtacgaatgaccaaggaaaaa
catggaaaggagtgtaaaatatgtgtacgtcctttcactgtattccgttggtgccctgga
tcccgcatgcgcttcaagaaaacggaaatctgccagacctgttccaaattgaagaatgtg
tgccaaacatgccttttggaccttgaatatgggcttccgattcaagttagagacgctgct
ctcaaaattcaagatgatctaccacgaaacgaagtcaataaggagtattacatacagaat
ctggacagtcagatgtcaaagtgtgacgcaagtcagccaagcaactctgcattgaaatcg
aagggtgcttcggatctgttgtcacgtttggctcgtacagctccatattataagagaaat
agaccacatgtttgctctttctgggtgaaaggagaatgtcgtcgtggagaagaatgtcca
tatcgccacgagaagcccactgaccctgatgacccattggccgaccagaacatcaaggac
agatattatggcgtaaatgaccctgtagccgagaagttgatgcgtcgagcggctgccatg
ccggcactacttccacctgaagacaacacggtcacaacactgtatgtgggcaaccttccg
gacaacatcaacgaagaggaactgaggggccatttctatcaatatggagaaatcagatcc
gtaactctggtgtctcgagctcaatgtgccttcgttcaatacacaacgaggagtgcagcg
gaacatgcagcagagaagacgttcaacaggctcgtgatcggagagaagaggcttaccatc
aagtggggaaaatcgcaaggtcgacaaggtgcaaatgagcataatgatatggctcccagg
ttggagccagtgcctgggcttcctggcacattgcctccaccgccagcattcttgcattca
ttcccacctcagatgcagccacctccaaatcgtacgaacgactttttcaaccttcaccat
tatggaggcccgggttggccggcgtgggtcggaccgccgatgggacccggcgcaccgccc
ccggcgccggcggggcaccactaccccagccaggaccccagccggcttggtgcccacgca
cacgcgaacgcgcttcgaacacagtgttaa
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