Agelaius tricolor (tricolored blackbird): 139585479
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Entry
139585479 CDS
T10815
Symbol
NPC1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
atrc04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
139585479 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
139585479 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
atrc02000
]
139585479 (NPC1)
Transporters [BR:
atrc02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
139585479 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
139585479
NCBI-ProteinID:
XP_071274361
LinkDB
All DBs
Position
Unknown
AA seq
1285 aa
AA seq
DB search
MGTPQGSPGGGGLGFLVLLLLLSPVRVLPQMCVWYGECGVASGDKRYNCAYDGPPIALPE
DGYDLMQELCPGLFFGNVSTCCDVHQLQTLKNNLQLPLQFLSRCPSCFYNLINLFCELTC
SPKQSDFLNVTSTIPYYDPISKENKSSITELQYFIGDRFANAMYNACKDVEAPSSNVKAL
GLLCGKDVKDCNATNWIEYMFSKDNGQTPFSIIPIFSDVPVHGMNPMNNATKGCNESMDD
STGPCSCQDCSIVCGPKPQPPPLPPPWLLFGLDAVYVIMWISYMGFLLIFFALVFGVWCY
RRRHFVSEYTPIDSNVAFSVNSHRDNGNITCGERLGERFENGLRMTFTSWGAFCVRNPRP
VILFSVVFIAMCCSGFVYIKATTNPVDLWSAPSSQARKEKEYFDTHFGPFFRTEQIIIQA
PKSHPDTYSPYPSGEDVPFGPPLTKDILHQVLDLQDAIVNITASYDNETVMLKDICLAPL
APYNNNCTILSVLNYFQNSHSVLDHTVGDEFFVYADYHTHFLYCVRAPASLNDTSLLHDP
CLGTFGGPVFPWLVLGGYDDDNYNNATALVITFPVNNYYNDSKKLMKALAWEKEFINFLK
NYNNSNLTISFSAERSIEDEINRESNSDVSVVLISYIVMFLYISIALGHIQSCRRLLVDS
KISLGIAGILIVLSSVACSIGIFSYFGIPLTLIVIEVIPFLVLAIGVDNIFIMVQTLQRD
ERLQGETLDKQIGRVLGDVAPSMFLSSFSETVAFFLGTLSTMPAVRTFSLFAGMAVLIDF
ILQVTCFVSLLGLDIKRQESNRLDILCCIKSSEEMSGVQRSENMLFLFFKNLFSPYLLKD
WMRPIVIAVFVGILSFSAAVMHNVEIGLDQSLSMPDDSYVIDYFSHISKYLHAGPPVYFV
LEEGHNYTTLEGQNMVCGGTGCNNDSLVQQVFNAAEIGSYTRIGYAPSSWIDDYFDWVKP
QSSCCRVYNTTGQFCNASVSDPSCIRCRPLTQEGKQRPQGEDFMTFLPMFLSDNPNPKCG
KGGHAAYNSAVNFINNKTEVGATYFMTYHTVLKTSSDFIDAMRKARIIADNITETMGIKE
KNYRVFPYSVFYVFYEQYLTIVHDAIFNLCISLGSIFLVTTVLLGFEVWAAVVVSITIAM
IIVNMFGVMWLWGISLNAVSLVNLVMSCGIAVEFCSHVTRAFTISTKGSRVERAEEALSH
MGSSVFSGITLTKFGGIVVLAFSKSQIFKIFYFRMYLAMVVLGATHGLIFLPVLLSYIGP
SVNKAKTRAAQERTRGTERERLLYF
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggggacccctcaaggcagccccgggggaggcggcctcgggttcctcgttctcctcctg
cttctgtcgcccgtgcgggtacttccacaaatgtgtgtctggtatggagaatgtggagtt
gcttctggagacaagaggtacaactgtgcttatgatgggccaccaatagcactaccagaa
gatggctatgacttaatgcaggaactctgtccaggtttattctttggcaatgttagcact
tgctgtgatgttcatcagcttcagactttgaaaaataacttgcagctgcctctgcagttt
ctctccagatgtccatcgtgtttttacaacttgataaacctcttctgtgaactgacttgt
agtcccaagcagtctgactttttgaatgttacaagcaccataccttactatgatcccatt
tcaaaagagaacaagagtagcattacagagctgcagtacttcattggagatcgattcgca
aatgcaatgtataatgcctgcaaagatgtggaggctccatcaagcaatgttaaagcactg
gggttgctgtgtgggaaggatgttaaagactgcaatgcaaccaactggattgagtacatg
tttagtaaagacaatggacaaactcctttcagcataattccaattttttcagatgttcct
gtccatggaatgaaccccatgaataacgctaccaaaggctgtaatgagtccatggatgat
tcaacaggaccatgcagctgtcaggactgctcaattgtctgtggtccaaaacctcagccc
cctccattgcctcccccttggctattgtttggtttggatgctgtctatgtcatcatgtgg
atctcatacatgggatttctactcatattttttgcactagtttttggagtctggtgttac
agaaggcggcactttgtctcagagtacaccccaattgacagcaatgtagccttttctgtg
aattcccaccgtgacaatggaaacattacctgtggtgaaaggcttggtgaaaggtttgag
aatggcctgaggatgacatttacatcatggggggctttctgtgtcagaaatccacgtcct
gttatcctcttctctgtggtcttcattgcaatgtgctgttcaggctttgtatatattaaa
gcaactacaaatcctgtagatctttggtcagccccaagcagccaagcccgcaaggagaag
gaatactttgacacgcactttggacctttcttccgtactgaacaaattattattcaagca
ccaaagagccacccagacacctactcaccttacccatcaggagaagatgtaccttttggg
cctccccttaccaaagatattctccatcaggtactggatttgcaagatgctattgtcaac
ataactgcttcttatgacaatgagactgtaatgctgaaggacatttgcctggctcctctt
gctccctacaacaacaactgcactatcctgagtgtactcaactactttcagaacagccat
tctgttctggatcacactgttggggatgagttctttgtctatgctgattaccacactcac
ttcttatattgtgttcgggctccagcatcactgaatgacacaagcttgcttcacgatccc
tgcttaggaacatttggtggacctgtatttccatggctggtgttgggaggatatgatgat
gataactataataatgctacagctcttgttattacttttcctgtcaataactactacaat
gactcaaaaaagctgatgaaagccttggcatgggaaaaagaatttattaactttttgaag
aactacaataattcaaacttaacaatatcattttctgctgaacgaagtattgaagatgag
atcaaccgcgaaagcaacagtgatgttagcgttgtgttgataagctatattgtgatgttc
ctctacatctctatagctttgggacacatccagagctgtagaagactgctggtggattcg
aagatctctctgggcattgcaggcatcctgattgtactgagctcagtagcatgttctata
ggcattttcagctactttggaatcccactgacactgattgtgatagaagtaattcctttc
ttggtgctggctattggagtggacaacattttcattatggttcagacacttcagagagat
gaacgccttcagggtgaaactctggataaacagattggcagagtcttgggagatgtggca
cccagtatgtttctctcatccttttcagagactgtggcattctttcttgggacactgtct
acgatgccagcggttcgcacgttctccctgtttgctggaatggctgtgctcatagacttc
atccttcaagtcacttgctttgtcagtctcctgggcttggatatcaagcgtcaagagagt
aatagactggatattctgtgttgcatcaaaagcagtgaagaaatgagtggagtccagcgt
tctgagaacatgttatttctgttcttcaaaaatctgttttctccatatctgcttaaggac
tggatgagaccaatagtaatagcagtgtttgtgggtatcctgtcattcagtgcagcagtt
atgcacaatgtagagattgggctggatcagtctctctcaatgccagatgactcctatgta
atagattacttcagccacatcagcaagtacctgcatgcgggtccccctgtctactttgtc
ctagaagaaggacacaactacaccactttggaagggcagaacatggtgtgtggtggaaca
ggatgtaataatgattcacttgtccagcaagtcttcaatgctgcagaaattggtagctac
acaaggataggctatgctccatcgtcctggattgatgactactttgactgggtgaagccg
cagtcatcttgttgcagagtctacaataccactggacagttttgcaatgcttcagtcagc
gatccatcctgcattcgttgtcgaccactgactcaagaaggcaagcagagaccacagggt
gaagacttcatgacctttttgccaatgttcctatcagacaaccctaatcctaaatgtggc
aaaggaggacatgctgcatataactctgctgtgaactttataaacaacaaaactgaggtt
ggagccacttattttatgacttaccatactgtactgaaaacatcatctgattttattgat
gctatgaggaaagctcggattatagcagacaatattactgaaaccatgggcatcaaagag
aagaactaccgggtgtttccttacagtgtgttttatgtcttctatgaacaatacttgaca
attgtgcacgatgctatctttaacctctgcatctctttgggttcaatatttctggtgaca
actgtgcttcttggttttgaagtatgggctgctgttgtggtttcaataactattgctatg
ataatcgtcaacatgtttggagtgatgtggctctggggcatcagcttgaatgcagtttca
ttagtaaatcttgtcatgagctgtggaattgctgtggaattttgcagtcatgtgacaaga
gcattcaccatcagtaccaagggcagcagagtggagcgtgcagaagaagctctgtctcac
atgggcagctcagtgttcagtggtatcacgctgaccaaatttgggggaattgtagtattg
gctttttccaaatctcaaatcttcaagatattctacttcaggatgtatctagctatggtt
gtgctgggagcaacacatggactgatatttcttccagttctgcttagttacataggccca
tcagtcaataaagctaaaactcgtgctgcacaagagaggaccagaggtacagaacgcgag
agactcctctacttctag
DBGET
integrated database retrieval system
