Agelaius tricolor (tricolored blackbird): 139585684
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Entry
139585684 CDS
T10815
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139585684 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139585684 (XAB2)
03041 Spliceosome [BR:
atrc03041
]
139585684 (XAB2)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139585684 (XAB2)
Spliceosome [BR:
atrc03041
]
Complex B
Other components
Prp19-related factors
139585684 (XAB2)
Complex C
139585684 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_19
Suf
TPR_12
TPR_8
TPR_2
TPR_15
TPR_16
TPR_7
PPR
ARM_TT21_C
TPR_18
TPR_1
TPR_9
Motif
Other DBs
NCBI-GeneID:
139585684
NCBI-ProteinID:
XP_071274628
LinkDB
All DBs
Position
Unknown
AA seq
904 aa
AA seq
DB search
MAAAEAEMAAREEPPGAAAGAGPGPEQQPGAMEGPAAMEGPGPAAGPAGEAGPAAVVADP
GAGPVPERPELCFEEEEVQHEEELLRNPFSVRGWLRYAQARQRGPRPRLNQIYERALREL
PGSYKLWYQYLRQRRAQVKGRCPSDPAFEEANAVHERALVFMHKMPRIWLDYCQFLAEQG
RVTRTRRTFDRALRALPITQHRRLWPPYLSFVRRHPLPETAVRVFRRFLKLCPEEAEQYV
SYLRSVGRLDEAAQVLARLVNDERFVSRQGKSNYQLWQELCELLSQHPDRVRSLDAGGII
RGGLTRFTDQRGRLWGALADCYVRCGHLEKARDVYEEAVQTVMTVRDFTQVFDSYARFEE
SVIAALLDTQAQLGQGQDEEVELELRLARFERLMARRPLLLNSVLLRQNPHNVHEWHKRV
ALHQGQPDKIIQTFTEAVRTVDPQRATGRPHELWVAFARFYEDNGQLDDARSILSRATRV
RFRRVEDLAAVWCEFGELELRHQRHQEALAVLRKATALPSRRAEYFDSSEPVQNRLYKNL
RVWAMLADLEESLGTFQSTRSVYERILDLRIATPQIVINYALLLEEHGRFEDSFKAYERG
IALFRWPHVGDLWLTYLSKFVARYGGRKLERARDLFEQALDGCPPQHAKTIYLLYARLEE
QFGLARRAMAVYERGTRAVPPEQQHDMFHIYIRRAAELFGVTHTRPIYQRAIEVLGDDAA
RELCLRFADMECKLGEVDRARAIYTYCSQICDPRITGSFWQTWKEFEIRHGNEDTIREML
RIKRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGLDEMKLLEQRAEALAAEAQ
RDTPRPAQQVLFVRAEAAPGSEPPLSLQGNPEEIDLDEEGEEPDEVQLEQRKVPASVFGG
LKDD
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctgaggcggagatggcagcgcgggaggagccgccgggagcggcagcggga
gcgggacccggcccggagcagcagccgggagcgatggagggaccggcggcaatggaggga
cccgggccggcagcggggccggcgggggaagcggggcccgcagcggtggtggcggatccc
ggagcggggccggttccggagcggcccgagctgtgctttgaggaagaggaggtgcagcac
gaggaggagctgctccggaacccgttctcggtgcgggggtggctccgttacgcccaggcc
cggcagcgcgggccccgcccccgcctcaaccaaatctacgagagagccctgagggagctg
ccgggcagttacaagctgtggtaccagtacttgcggcagcgccgggcccaggtcaaaggt
cgctgtccctctgaccccgccttcgaggaggccaacgccgtgcacgagagagcgctggtg
ttcatgcacaagatgccgcggatctggctggattactgccagttcctggccgagcagggc
cgggtcactcgcactcgccgcacctttgaccgggcgctgcgggcgctgcccatcacgcag
caccggcgcctctggccgccctacctgagcttcgtgcgccgccaccccctgcccgagacc
gccgtgcgcgtcttcaggaggttcctcaagctgtgtcccgaggaggcggagcagtacgtg
tcctacctgcgctccgtgggccgcctggacgaggccgcgcaggtcctggcccggctggtg
aacgacgagcgcttcgtgtcccgccagggcaaatccaactaccagttatggcaggagctg
tgtgagctgctctcccagcaccccgaccgcgtgcgctccctggacgccgggggcatcatc
cgggggggcctcacgcgcttcaccgaccagcggggccggctctggggggccctggccgac
tgctacgtgcgctgcgggcacctggagaaggcccgggatgtgtacgaggaggccgtgcag
acggtgatgacggttcgggatttcacgcaggtgttcgacagctacgcccgcttcgaggag
agcgtgatcgccgcgctgctggacacgcaggcacagctgggacagggccaggacgaggag
gtggagctggagctgcgcctggcccgctttgagcggctgatggcgcggcggccgctgctg
ctcaacagcgtgctgctgcgccagaacccccacaacgtgcacgagtggcacaagagggtg
gccctgcaccagggacagcccgacaagatcatccagacgttcacggaggccgtgcgcacc
gtggatccccagcgcgccaccggccgcccccacgagctctgggtggccttcgcgcgattc
tacgaggacaacgggcagctggacgacgccaggtccatcctgtcccgggccacccgggtg
cggttccgccgtgtcgaggacctcgccgccgtctggtgcgagtttggggagctggagctg
cgccaccagcgccaccaggaggcgctcgccgtgctgaggaaagccacggctctcccctcc
cgccgggccgagtacttcgacagctcggagcccgtgcagaaccggctctacaagaacctg
agggtgtgggcgatgctggcagacctggaggagagcctgggcaccttccagtccacccgc
agtgtgtacgagcgcatcctggacctgcgcatcgccaccccccagatcgtcatcaactac
gcgctgctgctggaggagcacggccgcttcgaggacagcttcaaggcctacgagcgcggc
atcgcgctgttccgctggccgcacgtcggggacctgtggctcacgtacctgtccaagttc
gtggcccggtacgggggccggaagctggagcgggcccgggacctctttgagcaggcgctg
gacgggtgccccccccagcacgccaagaccatctacctgctgtacgcgcgcctggaggag
cagtttgggctggcgcgccgcgccatggccgtgtacgagcgcggcacgcgggcggtgccc
cccgagcagcagcacgacatgttccacatctacatccggcgggcagccgagctcttcggg
gtcacccacacccgccccatctaccagagagccatcgaggtgctgggtgatgacgccgcg
cgggagctgtgcctgcgcttcgctgacatggagtgcaagctgggcgaggtggatcgggca
cgcgccatctacacctactgctcccagatctgtgaccccaggatcacgggcagtttctgg
cagacctggaaggagtttgagatccgccatgggaacgaggacaccatccgggagatgctg
cgcatcaagcgcagcgtccaggccacctacaacacccaggtgaacttcatggcctcgcag
atgctcaaggtgtcgggcagcgccaccgggacagtgtccgacctggccccggggcagagc
ggcctggatgagatgaagctgctggagcagcgcgcggaggcgctggcggccgaggcccag
cgggacacgccccgccccgcccagcaggtgctgtttgtcagggccgaggccgccccgggc
tcggagccgccgctgtccctgcaggggaaccccgaggagatcgacctggacgaggagggg
gaggagcccgacgaggtgcagctggagcagaggaaggtcccggcctcggtgtttgggggg
ctcaaggacgactga
DBGET
integrated database retrieval system
