Agelaius tricolor (tricolored blackbird): 139585825
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Entry
139585825 CDS
T10815
Symbol
SYMPK
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03015
mRNA surveillance pathway
atrc04530
Tight junction
Brite
Transcription machinery [BR:
atrc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139585825 (SYMPK)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
139585825 (SYMPK)
U7-dependent histone pre-mRNA processing factors
139585825 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
139585825
NCBI-ProteinID:
XP_071274898
LinkDB
All DBs
Position
Unknown
AA seq
1419 aa
AA seq
DB search
MKPRPLSSRRALVTSAARGGRRGERGSGPHLGLGSPQAPIWVWGPISGAMAGAQEGPSEE
EPGSDGRSTSERVVDLLNQAALIGNEGKISILKQVQELIINKDPTLLDNFLDEIIAFQAD
KSIEVRKFVVGFIEEACKRDIELLLKLVANLNMLLKDENVNVVKKAILTMTQLYKVALQW
MVKSKVISELQEACWEMMSSMASDIILLLDSDNDGVRTHAIKFVEGLIVTLSPRTADSDV
PKRHENDVSLERIPRDHPVIKYNVLWEEGKAALEQLLKFMVHPAISSINLTAALGSLATI
ARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLRHPSSGDFQPQITT
LLVDLGTPQAEIARSMPSPREARKRPRDEPDAALKKMKIEPPLGEDDEDKDLEAPAVAVA
KVAGAVTVPSDTDITAEFLQPLLTPENVANLVLISMVYLPEAMPASFQATYTPVESAGTE
AQIKHLARLMATQMTAAGLGPGVEQTKLLREEPKEEKVAKPDAVVIKRRLSALGQGQAIA
VLGAHGSAPGLPDETPQAKRRPEPIMPATQPRLAGAGGRKKVFRLSDVLKPLSEVQVEKL
KLGAVRRILRSERAVAASGAAQARVKILASLVTQFEVPLKGEVLSFILDDVRGRLDLAFA
WLFQEYNAHLARGGAGGLERYDECLIGLLAGLQEKPDQKDGIFTKVVLEAPLITESALEV
IRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRQQALQFIKRMYE
KEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETIKQCLYLYLALLPHN
HKLIHELASVYTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLH
SLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEV
FNRLLGTQHGDGASAVSPLNPGELLIALHNIDSSKCDMKSIIKATNLCFAERNVYTSEVL
AVVMQQLMEQSPLPMLLMRTVIQALTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKC
CQRTKPQGCPRCIPGVSQVYPRCLRCNPGVSVQVWKYPKVWEGFIKCCQRTKPQGCPRCN
PGVSQVSQVYLRCIPGDPRCVSAGVEVPQGVGRVHQVLPAHQAPGVSQVFQVCLRCNPGV
SPQVWKYPKVWEGFIKCCQRTKPQSFQVVLQLPPPQLAAVFEKCPELREPLLSHVRALTP
HQQAHIPLSTMAILEATTRHEPEGTPGEEKPPKRPPSSEEEPKAKAGGGVPGGGGVGVGG
GPPGSPPPPLPEGAPPELEPPPIFISGAEDEESSGGGGDASPPDPALEPPKDPPAGTELP
QPLPHPGEAPPPSPPSSEPPPPGTQSPPPGGVPEGPCEG
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgaagccacgccccctttcttcgcggcgcgcgctggtgacgtcagcggcgcgcgggggg
agacgcggagagcgcgggagcgggccccatttgggtctggggtctccccaggctcccatt
tgggtctggggtcccatttccggggccatggccggggctcaggaggggcccagcgaggag
gagcccgggagcgacgggaggagcacctcggaacgggtggtggatctgctgaaccaggcg
gcgctgatcgggaatgaggggaaaatcagcatcttaaaacaggtgcaggagctgatcatc
aacaaggaccccacgctcctggacaacttcctggatgaaatcatcgccttccaggccgac
aaatccatcgaggtgcggaaattcgtggtgggattcatcgaggaggcctgcaagagggac
atcgagctgctgctgaagctggtggccaacctgaacatgctgctcaaggatgagaatgtc
aacgtggtcaaaaaggccatcctgaccatgacccagctctacaaggtggccctgcagtgg
atggtgaagtccaaggtgatcagcgagctgcaggaggcctgctgggagatgatgtcctcc
atggccagcgacatcatcctgctgctggactcggacaacgacggcgtccgcacgcacgcc
atcaagttcgtggaggggctgatcgtgacgctgtcgccgcgcacggccgactccgacgtg
cccaagaggcacgagaacgacgtcagcctggagcgcatcccgcgcgaccaccccgtcatc
aagtacaacgtgctgtgggaggagggcaaggcggcgctggagcagctgctcaagttcatg
gtgcacccggccatctccagcatcaacctgacggcggcgctgggctcgctggccaccatc
gcccgccagcggcccatgttcatggccgaggtcatccaggcctacgagaccctccatgcc
aacctgcctcccacgctggccaagtcccaggtgagcagcgtgcgcaagaacctgaagctg
cacctgctgagcgtgctgcgccacccgtcctcgggcgacttccagccgcagatcaccacg
ctgctggtggacctgggcacgccgcaggccgagatcgcccgcagcatgcccagcccccgc
gaggcccgcaagcggccccgcgacgagcccgacgccgccctcaagaagatgaagatcgag
ccacccctgggcgaggatgacgaggacaaggacctggaggcgccggcggtggccgtggcc
aaagtggccggagcggtcaccgtcccctcggacaccgacatcacggccgagttcctgcag
ccgctgctgacccccgagaacgtggccaacctggtgctgatcagcatggtgtacctgccc
gaggccatgcccgcctccttccaggccacctacacgcccgtggagtcggccggcaccgag
gcgcagatcaagcacctggcccggctcatggccacccagatgaccgcggccggcctgggg
ccaggcgtggagcagacgaagctgctgcgggaggagcccaaggaggagaaggtggccaag
ccggacgcggtggtgatcaagcggcgcctgtcggcgctgggccagggccaggccatcgcc
gtgctgggcgcccacggctcggccccggggctgccggacgagacgccccaggccaagcgc
cggcccgagcccatcatgccggccacgcagccacggctggcgggcgccgggggccgtaag
aaggtgttccgcctcagcgacgtgctcaagccgctcagcgaggtgcaggtggagaagctg
aagctcggcgccgtgcgccgcatcctgcgctccgagagggccgtggccgccagcggggcc
gcccaggcccgagtgaagatcctggcctcgctggtgacgcagttcgaggtgcccctcaag
ggcgaggtgctctccttcatcctggacgacgtgcggggccgcctggacctggccttcgcg
tggctcttccaggagtacaacgcgcacctggcgcgcggtggcgccggcggcctcgagcgc
tacgacgagtgcctgatcgggctgctggccgggctgcaggagaaacccgaccagaaggac
gggatcttcaccaaggtggtgctggaggcgccgctcatcaccgagagcgccctggaggtg
atccgcaagtactgcgaggacgagagccgcacctacctgggcatgtccaccttgagggac
ctgatcttcaagcggccgtcgcggcagttccagtacctgcacgtgctgctggacctcagc
tcccacgagaaggacaaggtgcggcagcaggcgctgcagttcatcaagcgcatgtacgag
aaggagcagctgcgcgagtacgtggagaagttcgccctcaattacctgcagctcctggtg
caccccaaccccccctccgtgctcttcggggccgacaaggacacagaggtggcagcgccc
tggacagaggagaccatcaagcagtgcctgtacctgtacctggccctgctgccccacaac
cacaagctgatccacgagctcgcctccgtctacaccgaggccattgccgacatcaagcgc
acggtgctgcgcgtcatcgagcagccgatccgcgggatgggcatgaactccccggagctg
ctgttgctggtggagaactgccccaagggggccgagacgctggtgacgcgctgcctgcac
agcctgacggacaaagtgccaccctcgcccgagctggtcaagcgcgtccgggacctctac
cacaagcggctgccggacgtgcgcttcctcatccccgtgctcaacgggctggagaagaaa
gaggtgatccaggcgctgcccaaactcatcaaactcaaccccatcgtggtcaaggaggtc
ttcaaccgcctgctggggacgcagcacggtgacggcgcctcggccgtgtcccccctgaac
cccggggagctcctgatcgccctgcacaacatcgactcctccaagtgtgacatgaaatcc
atcatcaaagccaccaacctgtgctttgcggagcgcaacgtttacacctcggaggtgctg
gcggtggtgatgcagcagctgatggagcagagcccgctgcccatgctgctgatgcgcacg
gtgatccaggccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctgagc
aggctcatcatgaaacaggtgtggaagtaccccaaggtgtgggaggggttcatcaagtgc
tgccagcgcaccaagccccaggggtgtcccaggtgtatcccaggtgtatcccaggtgtat
cccaggtgtctcaggtgtaacccaggtgtgtctgtgcaggtgtggaagtaccccaaggtg
tgggaggggttcatcaagtgctgccagcgcaccaagccccaggggtgtcccaggtgtaac
ccaggtgtatcccaggtgtctcaggtgtatctcaggtgtatcccaggtgaccccaggtgt
gtctccgcaggtgtggaagtaccccaaggtgtgggaagggttcatcaagtgctgccagcg
caccaagccccaggggtgtcccaggtgtttcaggtgtgtctcaggtgtaacccaggtgtg
tctccgcaggtgtggaagtaccccaaggtgtgggaggggttcatcaagtgctgccagcgc
accaagccccagtccttccaggtggttctgcagctgcccccgccccagctcgccgccgtc
ttcgagaaatgcccggagctgcgggagcccctgctgagccacgtgcgcgccctcaccccg
caccagcaagcgcacatccccctgtccaccatggccatcctggaggccaccacgcgccac
gagcccgaggggacacctggagaggagaagccccccaagcgccccccgagctccgaggag
gagcccaaggccaaggcggggggaggggtcccgggtgggggaggggtcggggtcgggggg
ggtccccccggctcccctcccccccccctccccgagggagcccccccggagctggagccc
ccccccatcttcatcagcggcgccgaggatgaggagagctcgggggggggaggggacgcg
tcccccccggaccccgccctggagccccccaaggacccccccgcgggcacggaactcccc
cagcccctcccccaccccggcgaggccccgccccccagccccccctcgtcggagccgccc
ccccccggcacccagagcccccccccggggggggtccccgagggtccctgcgagggctga
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