Agelaius tricolor (tricolored blackbird): 139586846
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Entry
139586846 CDS
T10815
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03013
Nucleocytoplasmic transport
atrc03015
mRNA surveillance pathway
atrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139586846
09122 Translation
03013 Nucleocytoplasmic transport
139586846
03015 mRNA surveillance pathway
139586846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139586846
03041 Spliceosome [BR:
atrc03041
]
139586846
Enzymes [BR:
atrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139586846
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139586846
Spliceosome [BR:
atrc03041
]
Complex C
Other components
EJC/TREX
139586846
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139586846
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
139586846
NCBI-ProteinID:
XP_071276604
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAAGPDGAEAAPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVWGGSTPKPAP
KFTPKSQGSPRNPPRNLPRNPRGAPEICPWMCPQNPRGAPEICPWMCPQNSRGGPKIHPK
ICSKIHPKIPGEHPKIRPKIHPKIPGEPPKSALKSTSKSAPNPRGAPEICREIHPKIHLK
ICSKIHLKIPGEPPKSTPKSTPKFTSKSPQNLLQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggacaacgagctgctggactacgaggatgacgaggtggagaac
gcggcggggcccgacggggctgaggcggcgcccaagaaggacgtgaagggctcctacgtg
tccatccacagctcgggcttccgcgacttcctgctcaaacccgagctgctgcgcgccatc
gtcgactgcggcttcgagcacccctccgaagtccagcacgagtgcatcccccaggccatc
ctgggcatggacgtgctgtgccaggccaagtcgggcatgggcaagacggccgtgtttgtg
ctggccacgctgcagcagctggagcccgtcacgggccaggtgtcggtgctggtgatgtgc
cacacccgcgagctcgccttccagatcagcaaggagtacgagcgcttctccaagtacatg
cccagcgtcaaggtggcggtatttttcgggggcctgtccatcaagaaggacgaggaggtg
ctgaagaagaactgtccccacatcgtggtggggacgccgggccggatcctggccctggcg
cgcaacaagagcctcaacctcaagcacatcaagcacttcatcctggacgagtgcgacaag
atgctcgagcagctcgacatgcgccgggacgtgcaggagattttccgcatgacgccgcac
gagaagcaggtgatgatgttcagcgccacgctcagcaaggagatccgccccgtctgccgc
aagttcatgcaagatcccatggagatcttcgtggacgacgagacgaagctgacgctgcac
gggctgcagcagtactacgtcaaactcaaggacaacgagaagaacaggaaactcttcgac
ctcctggacgtgctggagttcaaccaggtctgggggggcagcaccccgaaacctgccccg
aaattcaccccaaaatcccaggggagcccccgaaatccgccccgaaatctgccccgaaat
cccaggggagcccccgaaatctgcccctggatgtgtccccaaaatcccaggggagcccct
gaaatctgcccctggatgtgcccccaaaattccaggggaggccccaaaattcaccccaaa
atctgctccaaaatccaccccaaaatcccaggggagcaccccaaaatccgccccaaaatc
caccccaaaatcccaggggagcccccgaaatctgccctgaaatccacctcaaaatctgct
ccaaatcccaggggagcccctgaaatctgccgcgaaattcaccccaaaatccacctcaaa
atctgctccaaaattcacctcaaaatcccaggggagcccccgaaatccaccccaaaatcc
accccaaaattcacctcaaaatcgccccaaaatctgctccaa
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