Agelaius tricolor (tricolored blackbird): 139586858
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Entry
139586858 CDS
T10815
Symbol
SKIC2
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139586858 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139586858 (SKIC2)
Enzymes [BR:
atrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139586858 (SKIC2)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139586858 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
139586858 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
AAA_16
Motif
Other DBs
NCBI-GeneID:
139586858
NCBI-ProteinID:
XP_071276624
LinkDB
All DBs
Position
Unknown
AA seq
1273 aa
AA seq
DB search
MARMEMERLGEDGRGFGGFRAAAPRPRELPLALLELGCAGRFELLTGEPELRRAPSTAAP
CLRVSPPWAPPPLGAELERKFLGTPEGLPLHRHQRARRSWLRTPDPRALFALDPTPVAGG
LRAERDPRTGALLGFSEVGRGSSSPSAGLSPSSSPSLLRPPGPPGEGLRGGGHSSVPFWP
GGQDEPTLEQLRSPQAEDEEEDVDFDTDLLTTXPGLKRGVQFKAQAKVGGPLSLSGLLET
LDPFELGGGDPDSGGPGGPPRAPQARGGPGLRPPPPRSDSLEELLNNKEAGPPPAPPPAP
PEELWXELLDAATPVXGFERLLPEPAHKWPFQPDPFQQRAALCLERGHSVLVAAHTSAGK
TAVAEYAIALARRHMTRSIYTSPIKALSNQKFRDFRETFGDVGLLTGDVQLRPEAACLVM
TTEILRSMLYNGSDTIRDLEWVIFDEVHYVNDNERGVVWEEVLILLPEHVKLVLLSATVP
NALEFAQWVGRTKRRCVRVISTPRRPVPLEHFLFTGNSARTRHQLFQLLGPGGAFSTQGY
YAAVEAKKEQSSKHAQSFGARQPSMGGSNPGQERGVWLSLLETLRERELLPAVTFTFSRG
RCEEQAAALGSLELLSGPERAQVRQFLTRCLARLRGSDRRLPQVLQLSDLLQRGIGVHHG
GVLPLLKEIVEMLFSQGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGNSFRDLLPGEY
TQMSGRAGRRGLDATGTVIILCKGPVPELSDLHRMMLGRPSPLQSRFRLTYPMILLLLRA
PALRPHDLMRRSFAEFPLRRDATAQTRRVAALREALAALGDPEETPGDLGDLPQYHQAVV
ALRRARSVLQRCLAQPGGQRVLSPGRVVVVSTPKHRNALGLVLQVSAGGAGGSGRSFTAL
VLCEKPPEDGGAPPEPPQDVPYPEELLLTRLFLPEGPPGHCLEQLRPEDIVGVTAKSLRV
NPETLLQELRPPRGPRPRSPPPGGGLAAALQELARLAGGAGREGGLPLLEAFGVPPGRDP
EAAAAAAELRGLGAALRGFRCVRSPRFPQQYSQFAARQELLQQLEELQFQLSDQSLLLLP
EYHQRLEVLSELGYVSGGAVALGGRVAALLSTEQLVLTELLLGNVLAPLRPEESVALLSC
LVTPGRGEPPPEGLPPALAQALERLRAVAARVARLEQQRGLGPGPDDFVAQFGFSLVQVV
YEWARGMPFAEIARLAPVQEGSVVRAIQRLEELLRELRQAARTVGDPAMAAKMEAAAAMI
KRDIVFAASLYTQ
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggatggagatggagaggctcggtgaggatgggagggggtttgggggtttccgc
gctgccgccccgcggccgcgggagctgccgctggcgctgctggagttgggatgcgccggg
aggttcgagctcctgaccggagaaccggagctgcggagggccccgagcaccgcagcaccc
tgcctcagggtctcccccccctgggcccctcccccgctgggggcggagctggagcggaaa
ttcctggggacccccgaggggctccccctgcaccggcaccaacgggcccggaggtcctgg
ctgaggaccccagacccccgggctctgtttgccctggaccccacccccgtggccgggggg
ctgcgggcagagcgggacccccggacgggcgccctgctgggcttcagcgaggtgggcagg
gggagctcctccccctccgcgggtctctccccctcctcctccccctccctcctgcgcccc
ccgggcccccccggcgagggcctgagggggggggggcactccagcgtccccttctggcca
ggcgggcaggacgagcccaccctggagcagctgcggagcccccaggctgaggatgaggag
gaggacgtggatttcgacacagatttgctgacgacgnccccggggctgaaacggggggtg
cagttcaaggcccaggccaaggttggggggccgctgtccctgtccgggctcctggagacc
ctcgaccccttcgaattgggggggggcgaccccgattccggggggcccgggggtcccccc
agagccccccaagcgagggggggcccggggctgcgcccccctcccccgcgctctgacagc
ctggaggagctgctgaacaacaaggaggcggggccgcccccggcgccgccccccgcgccc
cccgaggagctctggncggagctgctggacgcggccacgcccgtgnccggcttcgagcgg
ctgctgcccgagcccgcccacaagtggccattccagccagacccgttccagcagcgcgct
gccctgtgcctggagcgcggtcactccgtcctggtggccgcccacacctcggccgggaag
acggcggtggccgagtacgcgatcgcgctggcccggagacacatgacccggtccatctac
acgtcccccatcaaggccctgtccaaccagaagttccgggatttccgcgagacctttggg
gacgtggggctgctgacgggggacgtgcagctgcgccccgaggccgcctgcctggtcatg
accaccgagatcctcaggtcgatgctgtacaacggctctgacaccatccgggacctggag
tgggtgatcttcgatgaggtgcactacgtcaatgacaacgagaggggcgtggtgtgggag
gaggtgctgatcctgctgcccgagcacgtgaagctggtgctgctcagcgccaccgtcccc
aacgccctcgagttcgcccagtgggtcgggcgcaccaagcgccgctgcgtgcgggtgatc
agcaccccccggcggccggtgccgctggagcatttcctgttcacgggcaacagcgcccgc
acccggcaccagctgttccagctgctgggcccgggcggggccttcagcacgcaggggtac
tacgcggcggtggaggccaagaaggagcagagcagcaaacacgcccagagcttcggggca
cggcagcccagcatggggggctccaaccccgggcaggagcggggcgtgtggctgtcgctg
ctggagacgctccgcgagcgggagctgctccccgccgtcaccttcaccttctcgcggggc
cgctgcgaggagcaggcggcggcgctgggctcgctggagctgctcagcggccccgagcgc
gcccaggtgcgccagttcctgacgcgctgcctggcccggctgcgcggctccgaccgccgc
ctgccccaggtgctgcagctctcggacctgctgcagcgcggcatcggcgtccaccatggc
ggggtcctgcccctgctcaaggagatcgtggagatgcttttcagccaggggctggtcaag
gtgctgtttgccaccgagaccttcgccatgggggtgaacatgccggcacggaccgtggtc
ttcgactccatccgcaaacacgacgggaacagcttccgtgacctcctgccaggcgagtac
acgcagatgtcggggcgcgccgggcgccgcgggctggacgccaccggcaccgtcatcatc
ctgtgcaagggcccggtgcccgagctgtccgacctgcaccgcatgatgctgggccgcccg
tcgccgctgcagtcgcggttccgcctgacgtaccccatgatcctgctgctgctgcgcgcg
cccgccctgcgcccccacgacctcatgcgccgcagcttcgccgagttcccgctgcgccgc
gacgccacggcccagacccggcgcgtggccgccctcagggaggcgctggcggcgctgggg
gaccccgaggagacgcccggggacctcggggacctgccccagtaccaccaggccgtggtg
gcgctgcgccgcgcccgcagcgtgctgcagcggtgcctggcacagccgggggggcagcgg
gtgctgagcccgggcagggtggtggtggtgagcaccccgaaacaccgcaacgcgctgggg
ctggtgctgcaggtgagcgcggggggcgcggggggctcgggccgctccttcacggctctg
gtgctctgtgagaagccccccgaggacgggggagcccccccggagcccccccaggacgtg
ccctaccccgaggagctgctgctcacccgcctcttcctgcccgagggcccccccgggcac
tgcctggagcagctgcgccccgaggacatcgtgggggtcacggccaagagcctgagggtg
aaccccgaaactttgctgcaggagctgcgccccccgaggggaccccggccccgttccccc
cccccgggcgggggtctcgctgccgccctgcaggagctggcccggctggcggggggggcc
ggcagggagggggggctgcccctgctcgaggcctttggggtcccccccgggcgcgacccc
gaggcggcggcggcggcggccgagctcagggggctgggggcggccctgaggggcttcagg
tgcgtgaggagcccccgattcccacagcagtactcccagtttgctgccaggcaggagctg
ctgcagcagctggaggagctgcagttccagctgtcggaccagtccctgctgctgctgccc
gagtaccaccagcgcctcgaggtgctctcggagctcggttacgtctcggggggcgcggtg
gcgctgggcggccgcgtggcggcgctgctgagcacggagcagttggtgctgaccgagctc
ctgctgggcaatgtcctggccccgctgcggcccgaggagagcgtggcgctgctctcgtgc
ctggtgacccccggccgcggggagcccccgcccgaggggctgccccccgccctcgctcag
gccctggagcggctccgcgccgtcgccgcccgcgtggcccggctggagcagcagcgcggc
ctcgggcccggccccgacgacttcgtggcccagttcggcttcagcctggtccaggtggtc
tacgagtgggccaggggcatgccctttgcggagatcgcgcgcctggcgccggtgcaggag
ggctcggtggtgcgggcgatccagcggctcgaggagctgctgcgggagctgcgccaggcc
gcgcgcaccgtgggcgaccccgccatggccgccaagatggaggcggccgccgccatgatc
aagcgcgacatcgtcttcgccgccagcctctacacgcaataa
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