Agelaius tricolor (tricolored blackbird): 139587481
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Entry
139587481 CDS
T10815
Symbol
COL22A1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
atrc Agelaius tricolor (tricolored blackbird)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
139587481
NCBI-ProteinID:
XP_071277955
LinkDB
All DBs
Position
Unknown
AA seq
1616 aa
AA seq
DB search
MDTCMVGRCRVPQLLVLVTLVLSGERAAAQRAGCKSVHYDLVFLLDASSSVGKEDFEKVR
QWVSNLVETFEIGPDKTRVGVVRYSDRPTTEFDLGKYKTREEIKEAARQIQYYGGNTNTG
DALRYITTYSFSKEAGGRLSDRTVKKVAILLTDGRSQDFVLDPATAAHQAGIRIFAVGVG
EALKEELDEIASEPKSAHVFHVSDYNAIDKIRGKLRRRLCENVLCPNVHVEGDRFKHTNG
GTDEIPGFDLMDSFSVKQIFGMKEDGIQSAYVRLGSFPVVQKTEDVFPQGLPDEYAFVTT
FKFRKASRKEDWYIWQIIDKYGIPQVSIRLDGENKALEYNAVGLTRDAVRVVFRNARVSD
LFDRGWHKIALSIQAKAVSLYIDCKLVQVLPIEDRENIDIQGKTVIGKRLYDSVPIDFDL
QRMVIYCDSRHAELETCCDIPSGPCQVTVLTEAPPLEVRPTVGSEQVGHLKIFNCSCPPG
QKGERGPLGFEGPKGQKGERGIPGLPGLRGEKGESGKAYGIGEKGEKGEEGFPGFPGLKG
DKGEKGSLGSPGPPGRDGAKGEAGERGHPGAFGLPGPPGPKGSEGKQGPPGIKGYVGAPG
LQGERGEKGTRGDKGDRGLDGFPGKPGVEGKQGPPGSPGPPGASGTKGDKGEPGLPGLPG
TSVHLEGLKGEEGKPGPRGPQGHPGLPGPPGEPGLEGKPGVPGLPGPRGKKGEPGFPGIN
GLIGPQGPPGPPGTAGPPGPPGPPGLPGEIGVSGKTGPPGPPGLPGKDGLSGLPGLPGQK
GERGEKGEEGFPGKAGPKGEPGSRGQPGEQGEAGFPGPRGLPGLKGEKGDQGEKGRDGLP
AMKGERGEKGDTGSPGPPGLPGTPAFFTPHPRIPGEPGPKGDKGDRGVTGEPGLPGVPGE
QGVPGPAGVQGAKGEKGARGEAGAPGETGLSGPAGPPGPRGLPGNVGVPGGPGLPGKAGE
RGEKGDPGKEGKVGLPGPPGEPGRAGEPGLPGKGRDGEKGERGPPGLPGPFGHKGERGAP
GLPGQPGDRGVPGIGLAGPPGPAGPPGDKGSLGPRGVPGIPGPQGPPGQDGVPGNPGERG
PPGKPGSPPLLTPEDINLLVKDVCSECPPGPPGLPGIPGFKGDRGLRGPPGRDGQDGKPG
IAGPRGPPGPPGLDGPKGAKGDRGMTGEVGEKGEQGHPGMPGFSGAPGNPGPPGSDGAPG
PIGPAGNPGDMGKDGPPGPQGPPGLPGLPGIAGNDGKDGKPGSLGEPGKPGEQGLPGREG
ARGLPGFKGQRGDTGPPGPRGEPGVMGPAGREGPPGKDGDPGPIGPQGPRGLRGQPGKNG
VPGSAGEPGPAGIPGPKGNKGETGSPGLPGFIGPRGPPGEPGEKGPPGKEGTPGKQGAIG
SKGEKGEPGIKGEKGLRGEKGPPGDPGIPGHKGHPGLMGPHGPPGDTGQVGPPGPPGQPG
FPGPRGEPPSLETLRRLIQEELSKQLDVKLPYILAQIQPAQVKASHGRPGPPGPPGKEGL
PGRTGPPGEPGRPGQTGSEGPPGPIGPKGERGAKGEKGDTGIGQRGEMGAPGIPGLPGEP
GYAKDGMPGPPGPQGEAGVPGLAGPQGPPGANGQCDPSQCAYYASLAARPSNVKGP
NT seq
4851 nt
NT seq
+upstream
nt +downstream
nt
atggatacgtgcatggtgggaaggtgccgtgtgccccagctcctggttcttgtcacgttg
gtgctcagcggggagagagccgcggcacagagagcaggttgcaagagtgttcactacgac
cttgtcttcctcttggacgcctcctccagcgttgggaaagaagattttgagaaagttcgt
cagtgggtgtccaatttggtggaaacctttgagattggcccagacaagacccgagtgggg
gtggtgcggtacagcgatcggccgaccacggagttcgacctgggcaagtacaaaacccgt
gaggagatcaaagaggctgcacgacagattcagtactatgggggtaacaccaacactgga
gatgctctcaggtacatcaccacctacagtttttccaaagaagctggtgggagacttagt
gatcgaactgttaaaaaagtggccatccttttgactgatggaaggagccaggattttgtc
ttggatccagccactgcagcccatcaggctgggattaggatttttgctgtgggtgttgga
gaagccttaaaagaggaacttgatgagattgcttcagagcccaagtctgctcacgtgttt
catgtctctgattacaacgccatcgataaaattcgggggaagctgaggaggcgtctctgt
gagaatgtcctgtgtccaaatgtccacgtggaaggagaccggttcaaacacaccaatggg
ggcactgatgagatcccaggatttgacctgatggattcattcagtgtgaagcagattttt
ggaatgaaagaagatgggattcagagtgcttatgtacggcttggaagctttcctgttgtt
cagaaaactgaggatgtatttccacaaggcctgcctgatgaatatgcctttgtaactacc
ttcaaattccggaaggcttccaggaaggaagactggtatatctggcagattattgacaag
tatggcataccacaggtgtcgatcaggctggatggggagaacaaggctctggagtacaac
gccgtggggctcaccagggacgccgtcagggtggtgttccggaacgcgcgcgtcagcgac
ctcttcgaccgcggctggcacaaaattgccctcagcatccaggccaaggctgtctccctg
tacatagactgcaagctggtgcaggtgctgcccattgaggacagggagaacattgacatt
caaggaaagactgtgattggcaaacgcttgtatgacagcgtccccattgattttgatctc
cagaggatggtgatttactgcgactcccggcacgctgagctggagacctgctgcgacatt
ccctctggaccatgccaggtcacggtcctgacagaagcacctcccctggaagtgagaccc
actgttggcagtgagcaagttggacatctcaagattttcaactgctcttgtcctcctgga
caaaagggggagaggggtccacttggctttgaaggtcccaaaggtcaaaagggagaaaga
ggcatcccagggcttcctggactccgaggagaaaaaggagagtcaggcaaagcctatggc
ataggagagaaaggagaaaagggtgaagaaggctttcctggcttccctggactgaaaggg
gacaaaggagaaaaaggttccctgggctcacctggcccccctgggagggatggagcaaaa
ggagaagctggtgaacgaggacatccaggggcctttggactgcctgggccaccaggtcca
aagggatccgagggaaaacaaggtcctccaggcattaaaggctacgtaggagcaccgggt
ctacaaggagaaagaggagaaaagggaacacgaggagacaagggagacagaggcctggat
ggattccctggaaagccaggtgtggaggggaaacagggccctcctggcagccctggccct
cctggtgctagtgggaccaaaggagacaagggtgaaccaggacttccaggattgcctggc
acttcagtgcatcttgaaggcctgaaaggagaggaaggaaagcctgggccacgaggacca
caaggccaccctggacttcctggacctccaggagagcctggtctggaaggcaagcctgga
gtccctggtttgccaggtccaaggggtaaaaagggagaaccaggattcccaggaatcaat
ggtctgattggccctcagggacctccagggcccccaggcacggctggacccccgggaccg
cctggaccaccgggactgccaggagaaattggagtttctggtaaaactggaccacctgga
ccacctgggctgcctggcaaagatggactcagtgggcttccagggcttccaggtcaaaag
ggagaacgaggggaaaagggtgaggaaggctttcctggaaaagctggccctaagggtgaa
ccagggagccgtggccaacctggtgagcagggtgaagcaggttttcctggtcctagggga
ttacctggactgaaaggagaaaaaggagaccagggagaaaaaggaagagacggtctccca
gcaatgaaaggtgaaagaggagaaaaaggtgacacaggatcccctggacccccaggctta
cctggaacaccagccttcttcaccccacaccccaggattcctggtgaacctggaccaaaa
ggggacaaaggagatcgaggagtgactggagaacctggattacctggggtcccaggtgag
caaggtgtgccaggacctgcaggagtacagggtgctaagggggagaaaggagcccgagga
gaggctggagcccctggagagactggtttgagtggaccagcagggcccccaggtccaaga
ggcttgccaggaaatgtgggtgttcctggaggccctggactcccaggaaaggcaggagaa
agaggggaaaagggtgatcctggaaaagaaggaaaagtgggtttacctgggccacctggt
gagccagggcgtgctggagagccaggtttgcctgggaagggtagagatggagaaaagggg
gaaagaggaccaccaggattgccaggaccctttggacataagggtgagaggggagctcct
ggcctccctggacagccaggagacagaggagtgccaggaattggcctggctggaccccct
ggccctgcaggacccccaggagacaaagggtcactgggtccccgtggtgtgcctgggatc
cctggaccacaggggcctcctggccaggatggtgtacctggaaatccaggggaaagagga
cctcctggaaaacctggttccccacccctgcttactccagaggacataaatctcctggta
aaggatgtgtgcagtgagtgccctcctggcccaccaggactgccaggcatcccaggtttc
aaaggggatagaggtctgcgaggaccaccagggagagatggccaggatgggaaaccgggg
attgctggtcccagaggtcctccaggcccacctgggctcgatggcccaaagggtgctaaa
ggagaccgtggcatgactggggaagtaggagaaaaaggtgaacagggccaccctggaatg
cctggcttctcaggggctcctggaaaccctggtccacctggatcagatggggcacctgga
ccaataggaccagcaggaaacccaggagacatgggcaaagatggtcccccaggtccacag
ggcccaccagggctgcctggacttccaggcattgctgggaatgatggcaaagatggcaaa
ccaggatctctgggggagccgggaaagcctggagaacaagggctcccaggccgggagggt
gccagaggattgccgggtttcaaaggacagagaggagacacaggtcccccaggtccccgg
ggggagccaggtgtgatgggtcctgctggtcgtgaggggccaccagggaaggatggtgat
cctggtcccataggaccacaggggcctcgaggactccgagggcagccgggcaaaaatgga
gtgcctggatctgcaggagaacctggcccagctggtatcccaggtcccaaaggaaataaa
ggagaaacaggcagcccaggactccctggctttataggaccccgaggaccacctggagaa
ccaggagagaaaggtcctcctggaaaagagggcacaccagggaaacagggtgcaattggc
tccaaaggagagaagggagaacctggcatcaaaggtgaaaaaggccttcgaggagaaaag
ggtcctccaggtgatcccgggatacctggccacaagggccatccaggactgatgggtccc
catggacctccaggagacactgggcaagttggacctcctggtcctccagggcagccagga
tttccaggaccaaggggagagcccccatctctagagactttgaggagacttatccaagag
gaattatccaagcagctagatgtaaagttaccctacatcctggctcagatacagcctgca
caggtaaaagcatcccatggcagaccaggacctcctggtccccctgggaaggaaggactc
ccaggaagaactggccctcctggggagcctggccggcctgggcagactgggtctgaaggg
ccacctggaccaattggtcccaaaggagaaagaggagcaaagggggagaaaggagacact
ggcattggtcagcgaggggaaatgggtgccccaggaattccaggcctcccaggggagcct
ggttatgccaaagatgggatgccaggacctcctggccctcaaggtgaagctggtgtgcca
ggtctggcaggtcctcaggggcccccgggagccaatggacagtgtgacccctctcagtgc
gcttactatgcaagcctggctgcccggccctccaatgtcaaagggccatag
DBGET
integrated database retrieval system
