Agelaius tricolor (tricolored blackbird): 139588160
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Entry
139588160 CDS
T10815
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139588160 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atrc03000
]
139588160 (CNOT4)
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139588160 (CNOT4)
04121 Ubiquitin system [BR:
atrc04121
]
139588160 (CNOT4)
Enzymes [BR:
atrc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139588160 (CNOT4)
Transcription factors [BR:
atrc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
139588160 (CNOT4)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139588160 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139588160 (CNOT4)
Ubiquitin system [BR:
atrc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139588160 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
139588160
NCBI-ProteinID:
XP_071279277
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQSPIDKPSDSLSIGNGDSSQQITNSDTPSPP
PGLTKPNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSD
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKEL
SVQDQPSLSPTSLQNPTPHTTTAKGPGSGFLHPAAPTNANSLSSTFPVMPQRFPQFQQHR
AVYNSFNFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPISD
NSSSVESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSVPTSNTATTDSLNWDSP
GSWMDPAIITGIPASTGNSLDTLQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPFGTQ
IPLHRASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgacgctaaggaagaccctgtggaatgccctctttgcatggagcct
ctggaaattgatgacatcaatttcttcccttgcacctgtgggtaccaaatctgtcgtttc
tgttggcatcgtattcgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaagatccagcagtgtacaaaccactctcccaggaagagctgcagaggataaaaaac
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagagaatcgcaaacatttg
gccagtgtacgggttgtacagaagaaccttgtcttcgtggtagggctatctcagcgccta
gcagatccagaggttttgaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcattaataacagcacatcatatgcaggctcacagggtccaagtgccagtgcatat
gtaacctacatccggtcagaagatgccctcagagccatacagtgcgtcaataatgtggtg
gtagacggcagaacacttaaggcatccttaggtacaacaaaatattgcagttattttcta
aaaaatatgcagtgtccaaaaccagactgcatgtatctacatgagctaggtgatgaagca
gccagtttcacaaaagaagaaatgcaggcgggtaagcaccaggaatatgaacagaaacta
ctgcaagaattatacaaactaaaccccaactttctccaattatctacgggtacagttgac
aagaacaagaacaaagtgacagcactgcagagccctatcgataaaccttcagattccctc
agtataggaaatggtgacagctctcagcagataacaaacagtgacacaccttcaccacca
cctggtttaacaaaacccaatccagttatacccatcagttcatctaatcacagtgcacgg
tctccttttgaaggggctgtaacagaatcacagtcactcttctctgacaacttccggcac
cctaaccccatccccagtgggcttcctccattccccagctctccacagacttcaagtgac
tggcccacagcaccagaaccacagagcctcttcacatcagaaactataccagtatcctcc
tccacagactggcaagcagcttttgggtttggttcctccaaacagcaagaggacgactta
gggtttgatccctttgacatcacccgcaaagccttagcagacctgattgagaaggaactg
tcagtccaagaccaaccttccctttcgcccacatctcttcagaaccctaccccacacact
acaactgccaaagggccaggttctggattcctgcatcctgctgcacccacaaatgccaac
tctctcagtagcacctttccagtcatgccacagaggtttccacagtttcaacagcatcga
gcagtttacaactccttcaattttccaggccaagcagctcgctatccttggatggccttc
ccacgcaatagcatcatgcacttgaaccacacagcaaatcccacctcaaatagtaatttc
ttggacttgaatctcccaccacaacacagcacaggtctgggagggatccctatatcagac
aacagcagttctgtagagagtttaaatatgaaggaatggcaggacgggctaagggcactt
ctaccgaacattaacatcaactttggtggactgcccaatgcttcttccccctccaacgcc
aaccacagtgtaccaacgtccaacactgccaccaccgacagcctgaattgggacagccct
ggcagctggatggaccccgcaatcatcacaggtatcccagcctccacaggaaacagttta
gacactcttcaagatgacaatcctccacattggctaaaatctcttcaggccctcacagag
gtggacggccccagtgcagcgccatcacagacgcaccacagtaaccccttcggcacacag
atccctctgcacagagccagttggaatccctactctcctccttcaaaccccaccagcttc
cattccccacctccaggctttcagacagccttcagaccccccagtaaaacccccacagat
ctactacagagctcagcgctggatcgtcattag
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