Agelaius tricolor (tricolored blackbird): 139588198
Help
Entry
139588198 CDS
T10815
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139588198 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atrc03400
]
139588198 (MSH6)
DNA repair and recombination proteins [BR:
atrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139588198 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
139588198
NCBI-ProteinID:
XP_071279377
LinkDB
All DBs
Position
Unknown
AA seq
1350 aa
AA seq
DB search
MSRQSTLLRFFSKAAPPAATEPRSEPRRASGERNGLQAAGSPPGGAGRAAARRGENGEKG
AGGGAAAKAPKAASVSCEYSPGDLVWAKMEGYPWWPCLIYNHPTERTIVRGKGKSTRVHV
QFFDDSPTRGWISVKYLKPYKGSSDKETMKGGMFYSTKPEIKRAMVLADDAMSKDKTQRL
ELAVCNEPSDTEEEEEEMEEMSENASGNSEDCNSEEDVKSNKRVMSRERAVKAKRRRVLD
SDSDHDGSDVEFKPDGKEAASSEEASSGVDENESSDTETEAESVAESPVKVPSKRKRREV
KKPAKRSSLGNDCSETPKRAAAVSSEAKSKLTSFAAPESFESQANACSGGTGGFSVWEHE
KLDWLQEGKRRDAHRRRQGDPDYDPCTLYVPEDYLNKCTPGVRRWWQLKSQNFDAVICYK
VGKFYELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTET
PEMMEARCRSAGHSSRFDKVVRREICRIITKGTQTYSVMDCDPSENNSKFLLSVKEKEDA
AGTRLYGVCFVDTSMGKFHVGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSVDTQKILK
GSLVSCIQEGLTSGSQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVIKSLTSESDSLG
LTPGENSELALSALGGCVFYLKKCLIDQELLSQANFEEYVPVDIATAKTMSSSSLFGRTG
QRMVLDGVTLMNLEVLQNGTNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSIND
RLDAVEDLLAVPDKMSEVTEYLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEELKY
SKKKIADFLSTLEGFKIMNEIVEFMEEFASDFKSRVLRQLVTRKAKNPDGRFPDLSAELT
RWDTAFDHNQARKTGVITPKLGFDPDYDGALEDIRALEEDLRKYLDKQRKLLGSKSVQYW
GTGKNRYQMEIPESVISRNLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEERRDAALK
DCMRRLFYNFDKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPVILLPTDNAPPFL
ELRNSRHPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTLMRQAGLL
VVMAQLGCYVPAESCRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLV
LVDELGRGTATFDGTAIASAVVEELAQRIRCRTLFSTHYHSLVEDHSHSRAVRLGHMACM
VENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEKATISL
RIFRYLCQVVDGTTCDTNAVRKLTAMIDRL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcagagcaccctgctccgcttcttctccaaggcggccccgccggccgccacc
gagccccgcagcgagccccgccgcgcctcgggggagcggaacggcctccaggccgccggc
agccccccgggcggcgcgggccgagcggcggcgcggcgcggcgagaacggcgagaagggc
gcggggggcggcgccgccgccaaggcccccaaggccgccagtgtctcctgtgaatattct
cctggggacctggtgtgggccaagatggaaggctatccctggtggccatgtctgatatac
aaccaccccactgaaaggacaatagtcagaggaaaaggaaaatccactcgtgtccacgtg
cagttctttgatgacagccctacgaggggctggatcagtgttaaatacctgaagccatac
aaaggttcatcagacaaggagactatgaagggaggtatgttttacagcacaaagcctgaa
attaaaagagccatggtgctggcagatgatgccatgagcaaagataaaacccagaggctt
gaactggcagtatgcaatgagccttcagacacagaggaggaagaggaagaaatggaggag
atgagtgaaaatgcatcaggcaacagtgaagactgtaatagtgaggaggatgtgaaaagc
aataagcgagtgatgagcagggaaagagctgtgaaagccaagagaaggagagtgttggat
tctgacagtgaccacgatggctctgatgtggagttcaagcctgatgggaaagaagcagcc
agcagtgaggaagccagcagtggggtggatgaaaatgagtcttctgacacagagacagaa
gcagagagtgttgcagaaagccccgtaaaagtcccttcgaaacgaaagagaagagaggtg
aaaaagcctgctaaaaggagtagcctgggaaatgactgttctgaaacacccaaaagagca
gcggcagtctcttcagaagccaagtctaagctgacatcctttgcagcacctgaaagtttt
gaatctcaagcaaatgcttgcagtggaggcactggtggcttctcggtgtgggagcacgaa
aagctggactggctgcaggaagggaagaggagggatgcgcacaggaggcgtcagggtgac
cctgactacgacccctgcactctgtatgtgcccgaggattacctcaacaagtgcacgccg
ggcgtgcggaggtggtggcagctcaaaagccagaacttcgacgccgtgatttgctacaag
gtggggaagttctacgagctgtatcacatggacgcagtcaccggcgtcaatgagctgggc
ctcatcttcatgaagggcacctgggcccactcgggctttccagagacggcgttcggccgc
ttctccgacgtcctggtgcagaagggctacaaggtggcgcgcgtggagcagacggaaacg
cccgaaatgatggaagcgcgctgcaggtccgcgggccactccagcaggtttgacaaggtg
gtgcggcgggagatctgcaggatcatcaccaagggaacgcagacctacagcgtcatggac
tgcgacccctctgagaacaacagcaagttcctgctgagcgtgaaggagaaggaggacgcg
gccgggacgcgcctctacggcgtctgcttcgtcgacacctccatggggaagttccacgtc
ggccagttcccggacgaccgccactgctccaggttcaggactttggtagctcactacacc
cctgtgcaggtgctgtttgagaaggggaacctgtctgtggacacacagaagatactgaag
ggctcgctggtttcttgcattcaggaagggctgacctcgggttcccagttctggaatgcg
tctaaaacactaaaagtccttcttgaggaaggatatttcaaggagaagcagaattctgaa
aatggatgttctctgccctctgtaatcaaatctctgacttcagagagtgactccctggga
ttaactcctggtgaaaacagtgagttagctttgtcagctcttgggggatgtgtcttctat
ctcaaaaaatgtctgattgatcaggagctgttatcacaggcaaactttgaggaatatgtc
cctgtggatattgctactgcaaaaaccatgagttcaagtagtttgtttggcagaactggc
cagcggatggtgctggatggagtcaccctgatgaacttggaagtcctgcagaatggaacc
aatggaagcacagaaggtactttgttggaaaggattgattcttgctgtacaccattcggg
aagcgactcctgaaacagtggctctgcgctccactttgtaatcctaaatcgatcaatgat
cgtttggatgctgtcgaggacctcctggcagtgccagataaaatgtctgaagtcactgag
tacctcaagaaactgcctgaccttgaaagactgctcagcaaaattcacagcattgggtca
ccactcaaaagtcagaaccatcctgacagcagggccatcttctatgaagagctcaaatac
agcaagaaaaaaattgctgactttctgtctaccttggagggattcaaaataatgaatgaa
attgtcgaattcatggaggagtttgccagtgacttcaaatccagagtcctgaggcagctg
gtcacccgcaaagccaaaaatcccgatggccgcttcccagacctgagtgcagagctcacc
aggtgggacactgcctttgaccacaaccaggctcggaagacaggagtgattacccccaag
ctgggcttcgaccccgattatgatggagcactggaggatatccgagctctcgaggaggac
cttcggaagtacctagataagcagcgcaagctgcttgggtccaaatccgtgcagtactgg
gggacaggcaagaaccggtaccagatggagatccccgaaagtgtcatctcccgtaacctg
cccgaggagtacgagctgaggtccagcaggaagggctacaagcgctactggaccaaggag
atcgagaagatgctggctgccatggtgaacgccgaggagcgccgcgacgccgccctcaag
gactgcatgaggcgcctcttctacaacttcgacaagaacagcaaggactggcagacagct
gtggagtgcattgctgtgctggatgttttgatgtcccttgctcactacagtcagggtggt
gatggacctctgtgccgacctgtaatcctgctgcctacggataatgctcctcccttcctg
gaactcagaaattcccgccatccatgcatcacaaaaactttctttggagatgattttatt
cccaatgacatcgtgataggcatcaaggatgaaggcagcagcagtgaggcctcctgtgtg
ctggtaactggccccaacatgggtggcaaatctacgctcatgagacaggctggtctcctg
gtggtcatggcccagctggggtgctacgtgcccgcggaatcctgcaggctcacgcccatc
gaccgcgtgttcacgcggctcggtgcctccgacaggatcatggccggtgaaagtaccttc
tttgttgaattgagtgagacttccagcattctgcagcatgcaacagagcattcccttgtt
ctcgtggatgaactgggcagaggcacggccacgtttgacggcacagccatagcgagcgca
gtggtggaggagctggcgcagaggatccggtgccggacgctgttctccactcactaccac
tccctggtggaggaccattcccacagcagggccgtgcgcctgggacacatggcatgcatg
gttgaaaacgagagtgaggatccaagccaggaaaccattacgttcctgtacaagttcatt
gaaggagcctgcccaaagagctatggcttcaacgctgcaagacttgcagatattccagag
gaagtcattcagaaggggcacagaaaagccaaagagtttgaaaaagcaaccatctcactg
agaatatttaggtacctgtgccaggtggtggatggaacaacctgtgacacaaacgcggtt
cggaaactcacggcgatgatcgaccggctttag
DBGET
integrated database retrieval system
