Agelaius tricolor (tricolored blackbird): 139588254
Help
Entry
139588254 CDS
T10815
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139588254 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atrc03400
]
139588254 (MSH2)
DNA repair and recombination proteins [BR:
atrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139588254 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
139588254
NCBI-ProteinID:
XP_071279477
LinkDB
All DBs
Position
Unknown
AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTAHGADARLAARELF
RTRAVIRQLAGAPGTEKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANSAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMFQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLNDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSAINDEYIKNREEYEEAQDAIVKEIINIASGYAEPMQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGRMVLRGARHPCIEVQDEVAFIPNDITF
EKGKRMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKLYREREEGEKIIQDFLCQVKALPLTD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggcgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccggcagctggcgggggcaccgggaactgagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcctttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaagaaaatgactgg
tatttagcttacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaacgacatgtccacagccattggggttgtgggggtgaagctgtctgctgctgatgga
cagagggtggtaggagtgggctatgtcgacactacactgagaaaattgagtgtttgtgag
ttcccagataacgatcagttctccaaccttgaagctctactggttcaactgggcccaaag
gagtgtgtgctgccaggaggagagactgcaggagagatggggaaactcagacaagtcatt
cagaggggaggaatcctgattacagacaggaagaaggcagatttcacaacaaaagatatt
gttcaggatctcaaccgcctgttgaaatcaaagaaggaagagcagctgaacagtgcagca
ctgccagagatggaaaagcaggttgctgtttcgtctttgtcagctgttatcaagtttttg
gagttgctgtcagacgagtctaattttggacagtttgaactgactacctttgatcttagt
caatatatggttctagacaatgcagctgttcaagccctcaacctttttcagagttctgtg
gaaaatgcaaattctgcacagtctctagctggattactgaataaatgcagaacccctcaa
ggacaaagactggttaatcagtggatcaaacaaccacttatggacaagaccagaattgaa
gaaaggttgaatttggttgaagcttttgtgatggatccagagctacgtcagtgcctccag
gaggatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaagactgttacagaatgttccaggctatcaatcaactccctaatgtt
gtacaagcactagagaaacatgaaggagctcaccagatgttgttgttggctgtatttata
acacctcttaatgatatctgctctgacttctcaaagtttctggagatgatagaaacaaca
ttggacatggaaaaggtggagaatcatgaatttcttgtcaaggcttcttttgatcccaat
ttaacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtccttactaaag
actgcagccaaagaactaggtttggaagctggcaaaagtatcaaactggagacaaattca
cagtttgggcatcactttagggtaacgtgtaaggaggaaaaagctctccgtaacaattcg
aaatatggaatcattgatacacagaagaatggtgtgaaatttactaacagcaaactgagt
gccatcaatgatgaatatataaagaacagggaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagagcccatgcagaccatgaacgac
gtgatagcccagctggatgccattgtcagctttgcccacgtgtccaacggggctcccgtg
ccctacgtgcggcccgtggtgctggagaagggccagggcaggatggtgctgagaggggcc
cggcacccctgcatcgaggtgcaggacgaggtggccttcatccccaatgacatcaccttc
gagaagggcaagcggatgttccacattattactggccctaacatggggggaaaatcaaca
tacatccggcagacaggggtgattgttctcatggcccagattgggtgttttgtgccctgt
gagtctgcagaaattaccattgtggattgtatcctggctcgggtgggagcaggagacagc
cagctcaaaggagtgtctactttcatggctgagatgctggaaactgcctcaatcctcagg
acagcaactgagaactccctgattatcattgatgagctgggaagaggaacttccacctac
gacggctttggcttagcctgggctatctcggaatacattgccagcaaaatctgtgggttt
gccatgtttgctacacacttccatgagctcacagctcttgctgaccaagtgccaacagtc
aataacctccatgtcactgctctgaccagcgatgacacactcaccatgctttatcgggtc
aaggaaggtgtttgtgaccagagttttggaatacatgtagcagagttggcggctttccca
aaacatgtgatagaaagtgcaagagagaaagcattggagctggaggagtttcaaaacatt
ggcaagtccaaggaatctgaaggagagccaccagccaagaaattatacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtgaaagcattgcccttgacagat
atgtcagaagaagacatcaaagtcaagttgaagcagctgagaaatgacgtgctggcaaag
aacaacagttttgtgaatgaaataatttctcgaacgaaagttacatcatga
DBGET
integrated database retrieval system
