Agelaius tricolor (tricolored blackbird): 139588741
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Entry
139588741 CDS
T10815
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atrc03041
]
139588741
Enzymes [BR:
atrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139588741
Spliceosome [BR:
atrc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139588741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
AAA_19
HA2_N
nSTAND3
Ank_2
ATPase
Ank_4
AAA_22
AAA_23
Ank
PhoH
NPHP3_N
AAA_7
AAA_30
AAA_16
ResIII
UvrD-helicase
SRP54
AAA_29
T2SSE
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
139588741
NCBI-ProteinID:
XP_071280436
LinkDB
All DBs
Position
Unknown
AA seq
1420 aa
AA seq
DB search
MSRPRNVPPRQHGAGTAGSGAPAAPGRSRGGKGLKDIRVDEEVEIAVNLALERFRYGEDT
EMEFPSSFTRTERAFVHRLCHSLGLISKSKGKGANRYLTVRKKDGSELKRAVMSCALTPG
TKHSICTLIRNFPVTNKERTELLPKTEQGNAYAVESENKEVKTSGRLSDGIPQVPVKRGE
SEFDSFRQSLPVFEKQEEIVKIIKDHKVVLIVGETGSGKTTQIPQFILDDCHKNGTPCRI
FCTQPRRLAALAVAERVAAERREKIGHTIGYQIRLESRVSPKTLVTFCTNGILLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQSQANLKLIISSAALDADLFIRYFGCC
PVIHIQGRPFEVKEMFLEDILRSTGYTNKEMAKYKKEKQQEEKQQSTLTEWCAAQENNSK
LEPERPRFVPRAAEECSLLGDNGDTVFNQLTEKDANCLELWLIKEMDSRLSDIWLHKDID
AFAQVFHLILNENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGANIHCRSSNGWMA
VDWAKHFGQTEVVDLLESYSASAGFGNLDESSLVRTSGSDLSAEDRELLTAYHHSFDDEK
VDLDLIMHLLYNICHSCETGAILIFLPGYDEIVSLRDRILFDDRRFADNAHRYQVFMLHS
NMQTSDQKKVLKSPPPGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSCVTML
KMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFENMLEFQTPELLRMPLQELCLHTKLL
APINCSVVDFLLKAPDPPPAFIVKNALQMLKTIDAMDPWEDLTELGYHLTELPVEPHLGK
MVLCAVVLKCLDPVLTIACALAYRDPFVLPTLASQKRAAMLCRKCFTAGTFSDHMVLLRA
FQAWQKARSDGWERAFCEKNFLSQATMQIIVGMRTQLLGQLRASGFVRARAGADIRDVNA
NSENWAVVKAALVAGMYPNLVHVDRESLVLTAPKEKKVRFHPTSVLSQPQYKKIPPVNGQ
TAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPITVALFCGPARLPSNALQACSSCQGD
RVSSGSSDSEMEDRTTSNVSLLKLDEWLHLKLDSEAAGLVLQLRQKWHSLFLRRMRAPSK
SWSQADEAIVRAVVAVLTAEEQSAGLQQPSGIGQRPRPVASEDRLVPSTWRSTNTRRSTA
ETEFSDSSHAEKVLMRSTRPILHQPKKYKRKNTLHSKQISDDRSDRSSVKSADSSSFPSP
CASPSSPMSGKASKSPSPRQNMPVRYFIMKSSNLQNIEISQQKGIWSTMPSNERKLNGAF
WESSMVYLVFSVQGSGHFQGFARMCSSIGREKSQDWGSAGFGGVFKVEWIRKESIPFQFA
HHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDHIPLE
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccaggaatgtcccgccgcggcagcacggcgcgggcacagcgggctcgggc
gctcccgccgcgccgggccgcagccgaggcggcaaaggtctgaaagatatccgtgtggac
gaggaggtggagatcgcggtgaacctcgctctggagcggttccgctatggcgaggacacg
gaaatggagtttccgtcttctttcactagaaccgaaagagcatttgttcaccggctctgt
cattctcttggactgatatcgaagagtaaaggaaaaggagcaaatcggtacctaaccgta
agaaaaaaggatggatcagaactcaaacgtgcagtaatgagttgtgccttaactcctggt
acaaaacacagtatttgtactttaattcgaaattttcctgtcacaaataaagaacgaaca
gaacttctgccaaagacagaacaaggaaatgcatatgctgttgaatctgaaaacaaagaa
gtgaagacaagtggacgacttagtgatggtatcccccaggttcctgtgaaaagaggggaa
tcagagtttgattctttcaggcaatcactaccagtttttgaaaagcaggaagaaattgtt
aaaataataaaggaccataaagttgttttgattgtaggagagactggatcaggaaaaacc
actcaaatcccccagtttattcttgatgactgtcacaaaaatggaactccctgccgtata
ttttgcactcagccaagacgtttggcagcacttgctgtggctgaaagagtggcagcagaa
agaagagaaaagattggccatacaattggttatcagatccgattagaaagcagggtttct
ccaaagacactggtaaccttttgcactaatggcatactgcttcgcacgttgatggcagga
gacagcaccctatcaaccgtgacacatgtcattgtggatgaagtacatgaaagggatagg
ttcagtgacttcttgcttataaaactgagagatgtgttgcaaagccaagctaatttaaaa
ctaattatttctagtgctgctctagatgcagacctctttattaggtattttggatgttgc
ccagtaatacacatccaaggaagaccttttgaagttaaagagatgtttttggaggacatt
ttacgaagtactgggtatacaaacaaagagatggcaaagtacaaaaaagagaagcagcaa
gaagaaaaacagcaaagcactcttactgagtggtgtgctgctcaagaaaataatagtaag
ctggaacctgagagaccaaggtttgtcccaagagcagctgaagagtgtagtcttttgggt
gacaatggtgacacagtatttaatcaactgactgaaaaagatgcaaattgccttgaacta
tggttaataaaagaaatggattctcgtctttctgacatctggttgcataaagatattgat
gcctttgctcaggtgttccatctcattttaaatgaaaatgtcagtgttgattataggcac
agtgaaaccagcgcgactgcattaatgattgcttcagggagaggctttttgagtcaagta
gagcagctgatcagtatgggagcaaatatccactgcagatcttctaatggctggatggct
gtggactgggctaagcactttggacagaccgaggttgttgacctgttggaatcctacagt
gcttcagcaggatttggaaatctggatgaaagttccctggtccgaacaagtggtagtgac
cttagtgcagaggacagagagctgttgacagcttatcatcacagttttgatgatgaaaaa
gtggatcttgaccttattatgcacttactttataacatctgtcatagttgtgagaccgga
gcgattttaatatttcttcctggatatgatgagatagttagcctgagggaccgtattcta
tttgatgacaggagatttgctgacaatgcgcacagataccaggttttcatgcttcattca
aatatgcagacttcggatcagaagaaagtgcttaaaagtccacctcctggtgtgcgcaaa
ataattctttctacaaatatagcagaaaccagcataacagtcaatgatgttgtatttgtt
attgactcaggcaaggtgaaagagaagtcttttgatgcactgagttgtgttacaatgctg
aagatggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgt
cagcctggagtctgttttcgtctcttcagtaggctccgatttgagaatatgttggaattt
cagactccagaacttctaagaatgccacttcaggagctttgtttacacacaaaacttctg
gctccaattaattgttcagttgttgactttcttttgaaagctcctgatcctccaccagct
ttcattgtgaaaaatgctctgcaaatgctcaagactatagatgccatggacccttgggaa
gatctcactgaacttggttatcatctcactgaattgccagtggagccacacctcggtaaa
atggtgttgtgtgccgttgttttgaagtgcctggatcctgtcctgaccattgcctgtgct
cttgcctaccgagacccttttgtgctgcccacgctggcctctcaaaagcgtgcggccatg
ctgtgcaggaagtgtttcactgcgggaaccttcagcgaccacatggtgcttctcagggct
tttcaggcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaac
ttcctgtctcaagccacaatgcaaatcatcgtaggaatgagaacacagttgcttggtcag
cttagagcctcaggttttgttagagccagagcaggagctgatattagagatgttaatgct
aactctgaaaactgggctgtagttaaagctgccttagtggctgggatgtatcccaatctc
gtgcatgtagaccgagagagcctggttttaactgcaccaaaggagaagaaagtgcgattt
catccaacctctgttcttagtcaacctcagtataaaaagattcccccagtgaatggccaa
actgcagctgttcaggcactccctacagactggctgatatacgatgaaatgacgagagct
cacaggatagcaaacatcaggtgctgttctgttgtaacacccatcactgtggctctcttc
tgtggaccagctaggttaccaagtaatgctttacaggcatgttcatcctgtcaaggagac
agggtatccagtggtagcagtgacagtgagatggaggacagaacaacttctaatgtatca
ttactgaagctagatgaatggctccacctcaaactggactctgaagctgctggcttggtg
ttgcaactcagacagaagtggcatagcttatttctgcgtcgcatgcgagctccctctaaa
tcgtggtctcaagctgatgaagcaattgtaagagcagttgtagctgttttaactgctgaa
gaacagtctgcaggtttgcagcagccttcaggaattggtcagagaccaagacctgtggct
tctgaagatcgtcttgtaccatctacatggaggtcaactaacaccaggagaagtacagca
gaaactgaattctctgactcctctcatgctgaaaaagttctgatgaggtctacacgtccc
atacttcatcagccaaagaagtacaaacgaaaaaatactttacactccaaacaaatttca
gatgaccggtcagatcgatcatcagtgaaatctgcagacagcagtagcttccctagcccc
tgtgctagtccatcttctccaatgtctggaaaggcttccaaatcaccttcaccaagacaa
aatatgccagttcggtactttataatgaaaagtagcaacttgcagaacattgagatttct
cagcagaagggtatatggtccactatgccaagtaatgaacgaaagctgaatggagccttt
tgggaaagcagcatggtttacttagtattttctgttcaagggtctggacacttccagggt
tttgctagaatgtgttcatcaatagggcgtgagaaaagtcaggactggggatctgctgga
tttggaggtgtatttaaggtggagtggatccgaaaagaaagcattcctttccagtttgca
catcatttgctcaacccttggaatgacaataagaaagtacagataagcagagatggccag
gagctcgaaccacaagttggagagcagttgctgcagctttgggaccatattcctttggaa
tga
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integrated database retrieval system
