Agelaius tricolor (tricolored blackbird): 139589205
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Entry
139589205 CDS
T10815
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03018
RNA degradation
Brite
Enzymes [BR:
atrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139589205 (MTREX)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139589205 (MTREX)
Spliceosome [BR:
atrc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139589205 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
139589205 (MTREX)
Ribosome biogenesis [BR:
atrc03009
]
Eukaryotic type
Pre-60S particles
Helicases
139589205 (MTREX)
Transfer RNA biogenesis [BR:
atrc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139589205 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
139589205
NCBI-ProteinID:
XP_071281512
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGAKKRKTGPAEGARRSGKRLEEKPSLPAAIVKPKREAE
IDSNENVILGKKPKLEDVLSDDVNLTDLMPQVKVQSVETVEGCTHEVALPTNEEFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNN
LEAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLIKVKNEGD
DYGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKDSLKNSATESARPARPDERGEMQ
VVPVLVHLVSAISSVRLYIPKDLRPIDNRLSVLKSVQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDPNLEAIYKLCEKKAQIAMDIKVAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggaggacgcggccgccgct
gcttctggcgctaagaagagaaaaacgggccccgccgagggtgctaggaggtcggggaaa
agattggaagaaaaaccttcactaccagcagcaatagtcaagccaaaaagggaagctgag
attgatagtaatgaaaatgttattttggggaaaaaaccgaaattggaagatgttttatca
gacgatgttaatctgacagatctgatgcctcaggtaaaggtgcagtctgtggaaactgtt
gaaggttgtacacatgaggttgcgcttccaacaaatgaagaattcacaggtctgaagcca
agaactggaaaagctgcaaaagagtatccatttattcttgatgccttccagagagaagct
attctttgtgtagataataaccagtctgtgttggtgtcagctcacacatcagctggtaaa
actgtttgcgctgaatatgcaattgccctggctttgagggaaaagcagcgtgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatg
acaactgagatcttgagaagtatgctttacagaggttctgaggttatgcgcgaagttgca
tgggttatttttgatgaaattcactacatgagagatacagaacgtggtgtggtttgggaa
gagactattattttgcttcctgataatgtacattatgtattcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatt
tacactgactatcgacctactccactgcagcattatatatttccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caggtgcttagagatgcaggagacttagcaaaaggggatcagaaaggaaggaaaggagga
acaaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
cctgtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgaca
aagttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgca
attgattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttcccctt
ctgaagcgaggaattggtattcatcatggtggtttgcttcctatcttaaaagaaaccatt
gaaatccttttctcagagggcctaataaaggccttatttgcaacagagacttttgcaatg
ggaattaatatgccggccagaactgtgctgtttacaagtgccagtaaatttgatggaaag
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgcgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaaccatt
ggcaagcagcttttgaagggttcagctgatcccttaaacagtgctttccacctgacatac
aacatggtattgaacttacttcgagtggaggaaattaaccctgaatacatgttagaaaaa
tcattttatcagttccagcattacagaactatcccagaaatagtggaaagagtcaataat
ttggaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactac
aggatccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaacca
aagtactgcttgccctttctacagccaggaagactgataaaggtgaagaatgaaggtgat
gactatggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattct
ggtgaattggacccattgtatgtagtcgaagtgctcctgcactgcagcaaagacagtttg
aaaaattctgctactgagtctgcaaggccagccagacctgatgagagaggagagatgcag
gttgttcctgttttggtgcatcttgtctcagctatcagcagtgtccgcctctacatacca
aaagacctgaggcctattgataacaggctaagtgtgttaaaatctgtacaggaggtacag
aaacgttttcctgatggagtgcccttactagatcctattgatgacatgggcatcaaggat
caagggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtattcacat
cctcttcacaacgatccaaacttggaagccatatacaaactttgtgaaaaaaaagcacag
attgctatggatattaaagtagcaaagcgagaattgaagaaagccagaactgtcctgcaa
atggatgaactcaaatgccgcaagcgtgtgttaagaagactggggtttgccacatcctca
gatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactc
ctgacggaaatgatgttcaatggtctcttcaatgatttgtctgcagagcaggcaactgca
ctactcagctgtttcgtgtttcaagagaattccagtgaaatgccaaaattgactgaacag
ttggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagca
gaagcaaaactggaaactgatgaagaaaattacttgaattctttcagacccaacctaatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgacagat
gtctttgaaggtagcataattcgttgtatgaggcggctagaagaactgcttcggcagatg
tgccaggctgcaaaagccattgggaacacagaactggaaaataaatttgcagaggggatt
acaaaaatcaagagagatattgtctttgctgcaagcctttacctgtaa
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