Agelaius tricolor (tricolored blackbird): 139590128
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Entry
139590128 CDS
T10815
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04140
Autophagy - animal
atrc04142
Lysosome biogenesis
atrc04145
Phagocytosis
atrc04148
Efferocytosis
atrc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
139590128 (VPS39)
04142 Lysosome biogenesis
139590128 (VPS39)
04140 Autophagy - animal
139590128 (VPS39)
04148 Efferocytosis
139590128 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139590128 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atrc04131
]
139590128 (VPS39)
Membrane trafficking [BR:
atrc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
139590128 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
LIF1_N
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
139590128
NCBI-ProteinID:
XP_071283402
LinkDB
All DBs
Position
Unknown
AA seq
884 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDVGEVMSSESVCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTISKAKGASLFTC
DLQQSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALN
WTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIP
YLEHIIHVWEETGADFHNCLIQLYCEKVQGLMKEYLSSFPADRAPVPAGEEGGDLGDYRK
KLLLFLEKSSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENY
CHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggcttcttgttggtacaaaacaagggcatcttctgctttac
aggatcaagaaagatgtaggagaggttatgtcatcagaaagtgtctgttgcaacaggttt
gaagtgacactagagaaatccaacaagaacttctcaaagaagattcaacagatccatgtt
gtttctcaatttaaaattttggtcagtctattagaaaataacatttacgtccatgacctg
ttgacatttcaacaaatcaccacaatttcaaaggcaaaaggtgcatctctcttcacttgt
gatctccagcaatcagatacaggggaggaggtgctgaggatgtgtgtggcagtccgtaag
aagctccagctttatttctggaaggacagggagttccatgagctccagggggacttcagt
gtacctgatgtacccaagtctatggcatggtgtgaaaactccatctgtgtaggcttcaag
agggactattacctgatacgggtggatggaaaaggatccatcaaagaactgtttcccaca
gggaagcagctagaaccattggtagctcctgtagcagatggaaaagttgcagttggccaa
gatgatctaacagttgtgcttaatgaagaaggggtctgtactcagaaatgtgccttgaat
tggacagatattcctatagccatggaacaccagcctccctacatcattgctgtcctgcca
aggtacgtggagatccgcacctttgagccccggctgctggtgcagagcatcgagctgcag
aggccgcgcttcatcacctctggaggcacaaacattatatatgtggcaagtaatcacttt
gtttggaggctcattccagtgtccatagccacacagatccagcagcttctgcaggacaag
cagtttgagttggctttgcagttggcagaaatgaaagatgattcagatagtgagaagcga
caacaaatccaccacataaagaacctctttgccttcaacctgttctgccagaagcgcttt
gatgaatccatgcaagtttttgcaaagcttggtacagatcccactcatgtgatgggtctg
tatcctgacctcctgcccacagattacaggaaacagctacagtatcccaaccccctgcca
gggctctctggggcagagctggagaaggcacatttagctctgatagactacctaactcaa
aaaaggagtcagctagtgaagaagctaaatgattctgatcatcagtccagtacctcaccc
ctcatggaaggaacacccacgatcaaatccaaaaagaagctgctacaaatcattgatacc
accctcttaaagtgttacttgcatacaaatgtagcactggtggcaccactgctacgtctg
gagaacaatcactgccatattgaggagagtgagcatgtactaaagaaggcacacaagtat
agtgagctgataatactgtatgagaaaaaaggtctgcatgagaaagcattacaggtactg
gtggatcagtcaaagaaagccaactcccctttgaagggtcatgagaggacagtgcaatat
ttgcagcatttgggcacagagaacttgcacttggtattttcctactctgtctgggtgcta
agagattttcctgaagatggactgaagatatttacagaagacctccctgaagtggaagct
ttgccacgagacaaagtgctcagtttcttgatagaaaattttaaaagcttgactattcct
tacctggagcacatcattcatgtctgggaagaaactggtgcggacttccacaactgtctc
atccagctgtactgtgagaaagtgcagggcttaatgaaagaatatctcagttctttccct
gcagatagagctccagtgcctgctggggaggaaggaggagacttgggggattaccggaag
aagctgctgctttttctggagaagtccagctgctatgaacctagtcgacttatcagtgac
ttcccctttgatggtctcctagaagaacgtgctctgctcttgggtcgaatggggaagcat
gagcaagctctgtttatttatgttcatattttgaaggacaccaacatggctgaaaactac
tgccataaacattatgacagaaacaaagatggcaacaaagatgtgtatctgtccctgctg
cgcatgtatctctccccacccagtgttcattgcctgggacccatcaagatggaggtgctg
gagcctcaagccaatctgcaggctgctctgcaggttttggaactgcaccacagcaaactg
gataccactaaggcaataaacctactcccagcaaatacacagatcagtgagattcgcatc
ttcttagagaaagtacttgaagaaaatgctcagaagaaaagatttaatcaagtgctcaag
aaccttctccatgcagagtttctgagggtccaggaggagcggatcttgcatcagcaagta
aagtgcataattacagaggagaaggtgtgcactgtttgtaaaaagaagataggtaacagt
gcatttgctcgataccctaacgcaatagttgtgcattatttctgctccaaagaagtcaac
acactggacacctga
DBGET
integrated database retrieval system
