Agelaius tricolor (tricolored blackbird): 139590161
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Entry
139590161 CDS
T10815
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04140
Autophagy - animal
atrc04148
Efferocytosis
atrc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139590161 (VPS18)
04148 Efferocytosis
139590161 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139590161 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atrc04131
]
139590161 (VPS18)
Membrane trafficking [BR:
atrc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139590161 (VPS18)
Hops complex
139590161 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf-RING_5
zf-RING_Vps41
zf-RING_16
zf-RING_11
zf-RING_UBOX
zf-ANAPC11
zf-RING_2
zf_RING_Vps8
Nup54_57_C
LETM1_C
STX17_N
DUF5600
zf-rbx1
DUF1664
Motif
Other DBs
NCBI-GeneID:
139590161
NCBI-ProteinID:
XP_071283477
LinkDB
All DBs
Position
Unknown
AA seq
974 aa
AA seq
DB search
MASILDEYEDSLHRSVSVPQSRATVGIPHSGYVNARLEKETPIFNKQRIDFAPPEKINSL
VVSSNQLCMSLGKDTLLRIDLGKPDEPNQVELGRKDEAKVYKMFLDHTGSHLLIALNTSE
CLYLNRSVQKVRALSRWKGHLIESVGWNKFLGSETNTGPILVGTSQGQIYEAEISVSEGS
LFSTNPDQYFRQVYTLEEESGPAPVCCLEIERGLEGKFFIIATTRKRLFQFVGKVPEGTE
QQGFSSIFAVHADHLPSFREFPANLGFSEIAFYTPKLRSNPRSFAWMMGNGVLYGTLDYS
RPDSILSDERVWVYPPDIDITVNKPISIVLTQFHFLLLLPDRVKAVCTLNGQVVFQDLFL
EKFGLLTRMIKDPTVQQIWIHTEKVVFRYHVQRESRDVWKMYMNMNKFDLAKEYCKDRPE
CLDIVLAKEAEHCFQNRRYLDSAKCYALTQNYFEEIALKFIEAKQEEALMEFLIKKLSNL
KPSEKTQTTLLTTWLTELYLNWLGILQGDLSQRNLYLDTREKFRTFLSSPKNKDCLFNNR
ASIYELLASHGDTEHMVYFAVIMQDYERVVAHHCQHDEYDEALNVLSRHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGSRLDARNLIPALVNYSQSASTQQINEAIRYMEFCVYQLEETQ
QAIHNYLLSLYALCRPDSLLSYLEQAGTNPNRIHYDLKYALRLCAEHGHHRACVHIYKVM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
ALLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLLQAVFPNLPAYKQAKLEDLQK
KLAATSQPSKSHHRPKDADTISLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEEMQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatcctggacgagtatgaggactcgctgcaccgctccgtgtccgtgccgcag
agccgcgccaccgtgggcatcccgcactccggatatgtcaacgcacgactggagaaggaa
acgccaatatttaacaagcagaggattgattttgctcctcctgagaaaattaacagctta
gtggtctcctctaaccagctctgtatgagccttgggaaagacacccttctcaggattgat
cttggaaagccagatgaacctaatcaggtagagctgggacgcaaagatgaagccaaagtc
tacaagatgtttttggaccacacaggctctcatctcctgattgctctgaacaccagcgaa
tgcctttacctgaacagaagtgttcagaaagtgcgggcactctcccgctggaaaggacac
ttgattgaaagtgtgggctggaacaaatttcttggttcagaaaccaacacagggcctatc
ctggtggggacatcccaggggcagatctatgaggctgaaatctctgtcagcgaaggaagc
ctcttcagcactaaccctgaccagtacttccgacaggtctacactctggaggaggaatct
ggacctgccccagtctgctgcttggaaattgaacgaggtctagaagggaaattttttatt
atagccaccactaggaagagactctttcagtttgttggcaaagtgcctgaagggacagag
cagcaaggcttcagctctatatttgctgtgcatgctgaccatctgcccagctttcgggag
tttccagccaacctgggtttcagcgagatagccttttacactccgaaactgcgttccaac
ccacgctcctttgcctggatgatgggaaatggtgttctatatggtaccttggattacagt
cgtcctgattcaattctgagtgatgaacgggtctgggtttatcctcctgacattgacata
actgtgaacaagccaatatccattgtgcttacccagttccactttctgttgctgctgcct
gaccgggtgaaggctgtctgcactctgaacggacaggttgtttttcaggatctgttccta
gagaagtttggcttgctgacacgcatgattaaagatcccacagtccagcagatatggatc
cacactgagaaagtggtgttccgctaccatgtccagcgggaatccagggatgtgtggaag
atgtacatgaatatgaacaaatttgatttagcaaaagagtattgtaaggaccgtccagag
tgtcttgacattgtgttggccaaagaggcagagcactgcttccaaaacaggaggtatctg
gacagtgccaaatgttatgcactgacccagaactactttgaggaaattgctctgaagttc
attgaagccaagcaagaagaggccctgatggagtttctgattaagaagctaagtaaccta
aagccttcggagaagacacagactactctgctgaccacgtggttgacagagctgtacctg
aactggctgggcatattgcaaggagatctctcacagcggaatctctatttggatacacgg
gagaagttccgcactttcctgagcagtcctaaaaacaaagactgtctttttaataatcgg
gcatctatttatgaactgttggcaagccatggcgacacagagcacatggtctactttgca
gtcatcatgcaggattacgagcgtgtagtagctcaccactgccagcatgacgagtacgat
gaggctctaaatgtgctgtccaggcacagagacgagaagctcttctacaagttctctccg
gttctcatccagcatattcccaagaaggtggttgatgcttggatttcaatgggctctaga
ctggatgccaggaacctcattccagcccttgttaactacagccagagtgccagcacccag
cagatcaatgaagccatcagatatatggagttctgtgtctaccagttggaggaaacccaa
caagccattcacaactacctgttgtctctttatgctttgtgtcggccggactcgttgctg
tcatacctggagcaagcaggaaccaacccaaacaggatccactacgacctgaagtatgca
ctacgcctgtgtgcagagcatgggcaccaccgtgcatgtgtccacatttacaaagtgatg
gaattatatgaagaggctgtggatctcgccttacaggtggatgttgatcttgccaagtcc
tgtgcagatcttcctgaagatgatgaggagctccggaagaagctatggttaaagatcgct
cgccatgttgttcaggaagagaaggatgtcaagaaggcaatggcctgcctctccagctgt
gccctgctgaagattgaagatgtgctgccattctttccagactttgtcactattgaccat
ttcaaggaggcaatctgtaactccctggaggattacaacaagcacatcgaggagctgaaa
agggagatggaggaagccacgcagagtgccaagaggatccgagaggacatccaggaaatg
agaaataaatatggctctgtggagcctcaggaaaaatgtgctgcttgtgactttccactt
ctaaaccgccctttttaccttttcctgtgtgggcacatgtttcactacgactgtctcctt
caagcagttttccctaaccttcctgcctataagcaggcaaaacttgaagatcttcagaag
aagctggcagctaccagccagccatccaagagccaccatcgtcccaaggatgcagacacc
attagcttggggaaggggcagcagagccgggaacagatcaaagctgacattgatgacatt
gtggcagctgaatgtgtgtactgtggtgagctgatgatccggtccattgacaagcctttt
attgatccccagaagtatgaagaggagatgcaaagctggctgtaa
DBGET
integrated database retrieval system
