Agelaius tricolor (tricolored blackbird): 139591694
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Entry
139591694 CDS
T10815
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04382
Cornified envelope formation
atrc04510
Focal adhesion
atrc04512
ECM-receptor interaction
atrc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139591694 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139591694 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
139591694 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139591694 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atrc04147
]
139591694 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
atrc00536
]
139591694 (COL4A1)
Exosome [BR:
atrc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139591694 (COL4A1)
Glycosaminoglycan binding proteins [BR:
atrc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139591694 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139591694
NCBI-ProteinID:
XP_071286700
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVVGLLAPGVLKGEKGFPGQPGLPGPPGAS
GFQGPMGPMGPPGEQGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVSGPPGPPGPAPHMK
EKGSEIIKGEKGDPGQKGEQGIPGLPGSGFKGDKGEPGQPGPRGKPGKDGEPGLKGEPGL
PGGFGIPGRPGEPGTKGDKGERGYPGPPGRIIDAGPIDTFGEKGDPGVSGLPGLKGQKGE
KGFPGAQGIPGPPGQPIPGRVGSPGVPGERGEKGEKGSPGFPSPGIPGRDGFPGPPGLPG
PPGPPGITDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGEACALCDKVGPPGLPG
PQGPPGPAGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGPKGEPGDFTYDSILK
GEKGDPGFPGQPGIPGREGRPGKDGFPGPQGPKGVPGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGAAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGQPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGIKGERGFPGVPGLDMPG
PKGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSTGPKGEMGVMGTPGLPGTPGPVGERG
FPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQGEKGDHG
EAGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGSPGLSGD
KGEKGNIGIPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGL
PGPAGATGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGNQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPIGPPGPPG
LKGAKGEQGSSGWPGTPGGPGMKGDPGFQGLPGSPGLPGDVGPKGDLGPPGVPGVPGPKG
TPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPFGPPGPRGFPGPPGPDGLPGAMGPPGAP
SVAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFRKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggatgttccggttgtggaaaatgtgattgcagtggagtaaaaggacaaaaaggagaa
agaggcttgccaggactgcagggtgtgattgggtttcctggaatgcaaggacctgaaggt
cctcctgggccaccggggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagtatcaggcttcccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactggaagtataggacctcca
ggacctcctggaatgaagggagatccaggtgaagtggttggtcttttagctcctggcgtg
ctaaaaggtgaaaaagggtttcctggccaacctggactgcctggtccacctggagcttca
gggtttcagggaccaatgggaccaatgggccctccaggagagcaaggtcccccagggcca
ccaggacttccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggggtaagcggccccccaggacccccaggaccagcacctcatatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggtgatccaggccaaaagggcgaacag
ggaatcccaggattgccaggttcaggtttcaaaggagacaagggtgagcctgggcagcct
ggtccacgtggcaagcctggaaaagatggtgaaccaggactgaaaggagaacctggtttg
cctggagggtttgggattccaggacggcctggggagcctggcacaaagggtgacaaaggg
gagcgaggttatccaggacctccaggaagaattatagatgctggaccaatagataccttt
ggtgaaaaaggagaccctggagtttcaggtttgcctggactgaagggtcaaaaaggtgaa
aaaggcttccctggtgcacaaggaattccaggacctccaggtcaaccaattccaggcagg
gtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctcctgga
ttcccttcacctggaatccctggaagagatggtttcccgggtccccctgggttgcctggc
ccaccaggacctccaggcataacagatggaattgatcagtgccagcaaggagaacctggt
gcaccaggtagtcctggacttccagggagagatggatttccaggagagatgggagagaaa
ggtgacaaaggtgaagcctgtgccttgtgtgataaagtaggacctcctggacttccagga
ccacaagggccaccaggtccagcaggttttccaggacaagcaggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggggtgcctggtccccccggcactccaggcctt
atgggcagccctgggccaaaaggagaacctggagattttacctacgattctatcctgaaa
ggcgaaaagggagatcctggtttcccaggacagccaggcattcctggaagagaaggaaga
ccaggaaaagatggatttccaggtccccagggtccaaaaggagtaccgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtgcgtggtgaaaga
ggttttcctggccctcctgggataggtgctgcaggattacctggtgaaaaaggagacaga
ggctttgctggaaccccaggtttaccaggacttccaggagcaaagggtgaagcaggacga
actatatcgctccctggccctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccaggcagacctggcctaccaggagaa
aaaggtgctgtggggcagccggggatagggttccccggacctccaggtcccaaaggtttc
caaggtcagcctggctcacctggtcagccaggaactccaggaacccccggtctggatggt
ttgccaggagttccaggtttacaaggccaaaagggtgaacctggtgtaggtctacctggc
cctaagggattgccaggcccccctggcccagctggcatccctggagaaaagggaagtcca
ggactgcctggtttacgtggcgagcagggttttccgggcatacctggacagcagggattc
agaggtgacccaggtctcccaggtctccaaggcttgcagggccctccaggtgctccgggg
ctgggccctccaggattgccaggacctgctgggcagccaggaccccagggaccaccagga
tttcctggaataaaaggagaaaggggcttccctggtgtcccaggtctagatatgccagga
cctaaaggagataaaggcagcccgggccagccaggagtcccaggctctgtggggttacct
ggcctgccaggtccacagggggctgttggactgaaaggatcaacaggacccaaaggagaa
atgggagttatgggaactcctgggttgccaggaactcctgggccagttggagagcgaggg
tttcctggtgaaaaaggcagccaaggtttcaaaggtgtaattggaccacagggtgatcct
ggtgttaagggagataaaggtgaagctggtctcccaggaaaacctggaacaatagacaac
atggacatggttagcctcaaaggccagaagggagatcaaggagaaaaaggggaccatgga
gaagcaggagaaaaagggctacgtggggattatggagaaccaggaattccagggagagat
ggtgaacccggtactcctggacagccaggaccaaaaggtgatcaaggccccccagggtac
ccaggggatccaggagttccaggacaaaaaggatcggttggtgaaatgggtctgccagga
acacctggagaaaagggtcttcctggagtaccaggttcaccaggcacaccagggttccct
gggcaaaaaggcgaaaaaggagacaaaggagcaccaggttttcctggaataggttttcca
ggggctcctggtgagaagggagaaccaggaagaacgggtagtccaggtctatctggagat
aaaggtgaaaagggtaatataggaattcctggaatgccgggtgccccaggtcccaaagga
tcccctggcatggcaggatttccaggaagccctggccgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtgggattccaggtttaaaaggagaaccaggtgaacctggtctt
ccgggtcctgctggtgccactggtcagaagggtgaaccaggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtcttccaggtagaggacttccaggatttcctggt
gcaaagggagataaaggtgcaaaaggtgaagtgggttttccaggatccccaggaagtcca
gggatcccaggcctgaaaggggaaccaggatatgcaggtccaccaggccctaaagggaac
caaggtcttcctgggctaccaggaagtgcaattgaaggccctaaaggagacagaggaccc
caaggccaacctggtcttccaggtttaccaggtccaatagggccaccaggacctccaggt
ctgaaaggggccaaaggagagcaagggagcagtggctggccagggacccctgggggtccg
ggaatgaaaggtgatccgggtttccaaggactgccaggtagtcctggtttgccaggagat
gtcggtccaaagggtgatctcggacctccaggagttccaggtgttccaggtccaaaaggg
actcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccaggcccaccaggtccttttcagcttattaaaggggatcctggc
ttacctggacctgtaggaccagttggtctcaagggattcccaggacttccaggtcccaaa
ggacaacaaggggtgacaggaccttcaggtgtacctggaccacctggtagtccagggttt
gatggtcagcctgggcagaaaggagaagctggtccttttggtcccccagggcccagagga
tttcctggtccacctggccctgatggcttgcctggggctatgggcccaccaggggcacca
tcagttgctcatggattccttgttaccagacacagtcaaaccattgaagagccgtcgtgt
ccgtttggaacaaggctgatttaccacggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacagcaggaagctgtcttcggaaattcagtaccatg
cctttcttattctgcaatatcaacaacgtctgtaattttgcatcaaggaatgactactcc
tactggctgtctactcctgagcccatgccaatgaatatggctcctatcactggtgataat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgccatggtaatcgctgtt
cacagtcaaacaattcaaataccaccgtgtcctgaaggctggagctcactttggattggt
tactcctttgtcatgcacaccagtgctggtgctgagggctctggccaggccctggcatcc
cctggctcctgcctggaggagttccgcagcgctcccttcattgaatgccatggccggggc
acctgcaattactatgcaaatgcttacagcttctggcttgccactatagaaaggaatgag
atgttcaggaaaccgactccctcaaccttgaaagccggggatctacgctcaaatgttagc
cgttgtcaagtctgtatgagaaaaacataa
DBGET
integrated database retrieval system
