Agelaius tricolor (tricolored blackbird): 139591729
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Entry
139591729 CDS
T10815
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03013
Nucleocytoplasmic transport
atrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139591729 (UPF3A)
03015 mRNA surveillance pathway
139591729 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139591729 (UPF3A)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139591729 (UPF3A)
mRNA cycle factors
P-body specific factors
139591729 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF5427
Motif
Other DBs
NCBI-GeneID:
139591729
NCBI-ProteinID:
XP_071286818
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MRSEREAGQGLGPGRGGGRDSRPMDAPLLQESPRRDTDAPPNPPPTSPPSPLPPPPLHPA
PGKQREEKKTALSKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAY
INFRNPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDP
EYRKFLENYCTDEDKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEK
REERRRRELEKKRLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELAS
EKHKEKGEEADIEENKWDKSSGSGSIKSKSLESSLKEIKEKSQNDSDKEQRDLERRFREK
EPERQRIVQPCSCTSQELASEHIWDLQVKPMTAVGNPLKMLLIKSMRQIIQLELVLKRLK
KQNKTVWGKSLVKRNEFKIQHHHKNPLGCFRIPQAIASTK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggagcgggaggcagggcaagggctggggccgggccggggcggcggccgcgac
tcgcggcccatggacgccccgctgctccaggagtcgccgcgccgcgacacggacgctccg
ccgaacccgccgccgacgtccccgccgtccccgctgccgccgccgccgcttcatccggcg
ccggggaaacagcgggaggagaagaaaacggctctgagcaaagtggttattcgaaggctt
cctccttgtctaaccaaggagcaactggaggaacagctgcatcctttacctgcccatgat
tattttgagttttgcactgctgatcccagcctttatcctcatctctactcaagagcatac
attaactttagaaatcctgaggacatccttctttttagagatcgctttgatggctatgtc
ttcattgataataaaggtttggaatatcctgcagtggttgaatttgctccatttcagaag
atttccaaaaagaagctgaagaagaaagatgccaaagctgggagcattgaagatgatcca
gaatataggaaatttttagagaattattgtactgatgaagacaagatctgtgccaatcct
gagattcttttgggagagattgaggccaaaacaagggaactcattgctagaagaacaaca
ccccttttggaatatattaaaaatagaaaattagaaaagcagagaatacgagaagagaaa
agagaagaacggaggcggagagaattggagaagaaacgtttgcgggaggaagagaaaagg
aaacgcagagaagaagaaagacgtaaaagaaaagaagtggagaagcaaaagaagatttct
gaaaaagaaataaggatcaagcttctcaagaagcctgaaaaaggagatgaactggccagt
gaaaagcacaaagaaaaaggtgaagaagctgacattgaggaaaataaatgggataaatca
tctggatctgggagtataaaatccaaatctttggagagttcactaaaagaaattaaggaa
aagtcacaaaatgatagtgacaaagagcaaagagatttggagagaagatttcgagaaaaa
gaacctgaaagacaaaggatcgtccagccatgcagttgtaccagccaggagctcgcatcc
gaacacatatgggacctacaagtaaaacctatgactgcagtgggaaaccctttgaagatg
ctcttgataaaaagtatgaggcagataattcagctggagctagttctgaaaagactgaag
aaacagaataaaacagtctgggggaaaagtcttgtgaaaaggaatgaatttaagattcag
catcatcacaaaaatccattgggctgtttcagaattccacaggcaattgcatcaacaaaa
taa
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