Agelaius tricolor (tricolored blackbird): 139591736
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Entry
139591736 CDS
T10815
Symbol
RGPD4
Name
(RefSeq) ranBP2-like and GRIP domain-containing protein 4 isoform X1
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03013
Nucleocytoplasmic transport
atrc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139591736 (RGPD4)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
139591736 (RGPD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139591736 (RGPD4)
03110 Chaperones and folding catalysts [BR:
atrc03110
]
139591736 (RGPD4)
04121 Ubiquitin system [BR:
atrc04121
]
139591736 (RGPD4)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139591736 (RGPD4)
Chaperones and folding catalysts [BR:
atrc03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
139591736 (RGPD4)
Ubiquitin system [BR:
atrc04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
139591736 (RGPD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ran_BP1
Pro_isomerase
IR1-M
Zn_ribbon_RanBP
WH1
VID27_PH
TPR_1
TPR_2
TPR_CcmH_CycH
TPR_16
ARM_TT21_C
ANC1_spectrin
TPR_14
TPR_8
Motif
Other DBs
NCBI-GeneID:
139591736
NCBI-ProteinID:
XP_071286831
LinkDB
All DBs
Position
Unknown
AA seq
3007 aa
AA seq
DB search
MMRRTKPEVERYVASLQAAAPSPREKSMKGFLFAKLYFEIKEYELAKRYISTYLNVQERD
PKAHRFLGQIYEAEDNIEKAFGCYKRSVELNPTQKDLVLKIAELLCNNDITDGRAKYWVD
RAAKLFPGSPAIYRLKEQLLDCKGEDGWNQLFDLIQAELYARPDDVYINIRLVALYRSNN
RLKDAVLHCQEAEKRIPLQSSLEWCSCVVETFEEYLESLQDLEYDKNNWRTIKKDHLLAY
SSFVKLTLSSRDVQECREALESFDRALQSVKPYVSAADELSRTYVEMKGQLYMHAGALLL
KMAQDNETQWRPMCELAALCYLLSFQVPKPKSKLIKGDQTGQDMLEMLACDRKSQSGHML
LNLSHGKQDFFKEIVESFANKNGSSALFDSLFESGASRERSFIGTDDIGNVSTQAPVQIE
LHKYDIGAIRLHSGSLQHLVWLGLQWNSMSVLPPMRKWLKQLFHLPQETSRLETDAPESI
CLLDLEVFLLGVIFTSNLQLQEKFNSHYSAHQPQFLPLPICKLLYTEKQRSWWDAVRTLL
QRKSVPGTAAKLRLIVQHGISTLRTLDKHGLQPALIIHWAKSLQKTGINLNSFYDQKEYM
GRSVYYWKKVLPMLETIKKKRSISEPTDPLFKHFHSVDVQVFQVAAYEEEAQIAFAMLDA
VDGKTDDALIAFEAIDNVVSYWNLAMIFQRKAEEIENDVMLPEEHEEHKTYLLKAKYYLM
KIIAESSSDMSIAEKLPVPLETVREVLDTVIQELGENCEEGSLAFRNGLSRTVDSAMKHS
TPSPTKFSFSPTKTYKFSPKTPPQWAEDHKSILQMICQQVEALKNDLQEMKLNNSNTNAS
HRWPAENYGTDAIPDSYQRAQNLHEAPLTVATTGPSVFYSQSPAYNSQYLLGTAATNVTP
AKPPVYGMNRLAPQPHIYSYQPPPMHTPPLQNTSGCMFSQEMYGPPLRFDSPGTTLISPR
TADDYYNYSVPQASTNPTLPKPGYFTNRSATPPTLKPAEPKAMPKFGQPGTAEGSKPPMS
TPAQPSQPTTFKFKPNFKSNDGDFTFSSPPQVAPQPLNAPFNSRESLLDLLTSDKPLQDD
RYVDQKPVSDPTNSSRNIFNFSNKHIPGMSLRENTGQNVHKNMGFEKSDTFSAQEPSKPV
FMASNSDLANRSHETEGGSTHGGDEDDDGPHFDPVVPLPDKIEVKTGEEDEEEFFCNRAK
LFRFDAESKEWKERGIGNVKILKHKVSGKFRLLMRRDQVLKICANHYINTDMKLTPNAAS
DKSFVWHALDYADELPKPEQLAIRFKTPEEAMLFKKKFEEAQNILKSLGSNADTSVAQSS
GTAKETANQDIKEPNRTTSGTMNLGFQFLKDGTSSEPDSKGTLTATSTAPSTTISFGKDA
QQACSSGGFGQHLLKKDQWVCKVCLVPNEATVKNCVACQSPNPGMWETHGTPTTGYASLK
PSGNTVQDKFGSPFAKKEGQWDCSVCPTRNEAEDVNCSSCQSPKPQNQPNTSIPSVLASA
GLELGSIADTSKPQKNGFEGLFTKKEGQWDCNTCLVRNEGSSLACVACKTPNPSAKPTGD
ALPTPAFGLKSKLPELGGGQLGTGFTFGLEQGKTPPFTFQISSDTEAKSAKEGFSFSMQM
PAGGFKFGIQESSKFGIQESSKNTTKKDEPSKEHTTGFLKSVDEKDKKELPSDSGIGFQF
QETADKEKTDFVFGQNSSTSTFAELAKSTPREGFQFGKKDPNFKGFSGAGEKLFSSQNSK
TDQKANTSADLGEKDDDVYKTEESDDIHFEPIVQMPEKVEPFTGEEDEKVLYSQRVKLFR
FDPETSQWKERGVGILKILKNEVNGKVRILMRREQVLKVCANHWITTTMNLKQLSGSDKA
WMWMANDFSDGDAKLEHLAAKFKTPEQAEEFKQKFEECQRLLLDIPLQTPHKLVDTGRTA
QLIQKAEEMKCGLKDLKTFLTDDKTKLSEEESGNPACTSSTSDLVIKPHAESTGPTLEWD
NYDLREEALDDSVSSSVYASPLASSPVRKNLFRFGESTTGFSFSFKSALSPSKSPAKQNQ
SRTSVGTDEDSDVTQEEERDGQYFEPVVPLPDLVEVTSGEENEQVVFSHRAKLYRYDKDA
NQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMNLQQMKGSDRAWVWTA
CDFADGERKVELLAVRFKLQDVADSFKQIFDEAKHAQERETLITPLSSRANTPKEFPCGK
NAIAVLEETTRERTDVSHGDDTSDTTVEAAEVSSTSETPTKTVVSPPKFVFGSESVKSIF
SNEKSKTFTFGNTSATGSLFGFSFNPPRKSEGHIPASQDTAQKEPEASEPPKISNATQKP
VDSKVDNLPASSQDGPSNFSFRILEKGFNFSLFKSNPMAFWTSTSSMQPDSKAEKTTTVS
EDDVPSDEVVIVYELTPTPEQRALADFLKLPSTFFCYKNKPGYASDEDDDEDYETAVKKL
NGRLYPSDSEEKKKGQGPVKAGLAKKSEFNNERECAATLEKKPAPEEKDETKALQVPSAS
VCGVSTDTEGDSLEDLKSEAKIQEMKENEVASSSDLVSTSKEETPIPSKDEVTELAQSGT
SSEESHSTTETVKVSQTLSRAEDKPVDLSTKKSDSDGSESTQENRIISFGFGNTTGLSFA
DLASKSSEDFAFGSKDKNFKWANTGATVFGDTTHKADEDEGGSDDEVVHSDDIHFEPIVS
LPEVEVKSGEEDEEILFKERAKLYRWDRDVTQWKERGVGEIKILFHTQKKYYRVLMRRDQ
VLKVCANHVITKEMNLVPSDTSNNAFIWTATDYADGEVKVEQFAVRFKSQEMANSFKKRF
EECQLSLSELQKGHLSLAAGLSKDTNPVVYFEVSADDEPLGHITMELFANIVPRTAENFR
ALCTGEKGFGFKNSRFHRIVTDFVCQGGDITNHDGTGGRSIYGTAFEDENFIVKHTGPGL
LSMANKGRDTNNSQFFITLKKAEHLDFKHVVFGFVKDGMDVVKKIESFGSPKGLVNGRIV
ITDCGQI
NT seq
9024 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggcggacgaagcccgaggtggagcgctacgtcgcctccttacaggccgcggcg
ccgtcccccagagagaaatcgatgaaaggattcctctttgctaagctgtattttgaaatt
aaagaatatgaacttgctaaaagatatatatctacatacctcaatgtacaagagagagat
cccaaagcacacagatttcttggacaaatttatgaagctgaggataacatagaaaaagct
tttgggtgttacaagcgttctgtggagttgaacccaacacagaaagatcttgtattgaag
attgcagagttactatgcaataatgacattactgatggaagagcaaaatattgggttgac
agagctgctaagctctttcctgggagccctgctatttacaggttgaaggagcagttactg
gactgtaaaggtgaagatgggtggaatcagctttttgacctgattcaagcagaactttat
gcaagaccagatgatgtctacataaacatcagactagttgcgctctatcgttcaaataac
agattaaaggatgctgtgctccactgtcaggaggcagagaagagaatacctttgcagtca
agcttggaatggtgttcctgtgttgtagagacatttgaggaatatctggaatctttacaa
gacttggagtatgataaaaataactggagaactatcaagaaagatcatctgctggcctat
tccagctttgtcaaactgacactttcttctagagatgttcaggaatgcagagaggcactt
gaaagttttgatcgtgcacttcagtcagtaaaaccatatgtgagtgcagctgatgagttg
tctcgtacctatgtggaaatgaaaggacagctgtacatgcatgctggagctttgctgctg
aaaatggcccaagacaacgagacacagtggagacctatgtgtgaactagcagcattgtgt
tatctcctgagttttcaggttcctaaaccaaagtcaaaactcataaagggtgatcaaacc
ggacaagatatgctagaaatgttggcctgcgatcgaaaaagccagtctggtcatatgctg
ctgaacttaagtcatggcaagcaagacttctttaaagagattgtggaatcatttgcaaac
aagaatggctcatctgcattgtttgatagcctgtttgagagtggagcctctagagagagg
tcttttattggcacagatgatattggaaatgtcagtacacaagcaccagtgcaaatagaa
cttcacaaatatgatattggtgccattcgattgcacagtggcagtctccagcacctcgtg
tggcttggcctgcagtggaactctatgtcagtcttaccccccatgcgcaaatggttaaaa
cagctttttcacttgccccaagaaacatcaagacttgagacagatgctcctgaatctatt
tgcctcttagaccttgaagtattcctacttggggtgatattcactagcaacttacaactg
caagagaagtttaattctcactacagtgcacatcagcctcaatttttaccattgccaata
tgcaaactactctatactgaaaagcaaagatcctggtgggatgctgttcgtactcttctt
cagagaaaatcagtaccaggaacagcagcaaaactgaggcttattgtacagcatggcata
agtactctgcgaacactggacaagcatggccttcaacctgccttaatcatacactgggca
aaaagcttgcagaaaacaggaattaaccttaactccttctatgaccagaaggaatatatg
ggacgaagtgtctactactggaagaaagttctgcctatgctggaaactatcaaaaagaag
aggagtatttctgaacctactgatcctctcttcaaacacttccatagtgtagatgttcag
gtctttcaggttgcagcgtatgaagaagaggcacagatagcatttgctatgttggatgca
gttgatggcaaaactgatgatgctttaatagcatttgaagctattgataatgtggtgtca
tactggaatcttgccatgattttccaaagaaaagcagaagaaattgaaaatgatgtcatg
cttccagaagaacatgaggagcataaaacttaccttcttaaagccaagtattatctaatg
aaaattattgcggaaagctcctcggatatgtcaattgcagagaaattaccagtgcctctt
gaaactgtgagagaagtgttagatacagtgatccaggaacttggtgagaactgtgaagag
ggaagtcttgccttcagaaacggtctgtcacgaactgtagattcagcaatgaaacattcc
actccgtcaccaaccaagttctctttttcaccaactaagacctacaagttctctccaaaa
actccccctcagtgggcagaagaccataaatctatacttcaaatgatttgtcagcaagtg
gaagctttaaagaatgatttgcaagaaatgaaacttaataattccaacacaaatgcatct
catcggtggcctgctgaaaactatggaactgatgcaataccagacagttatcagagagca
caaaatcttcatgaagcccctttaacagttgctaccactggcccatctgtgttctacagc
cagtcacctgcctataactctcagtatcttctgggaactgctgcaaccaatgtaacacca
gcaaagcctcctgtctatggcatgaaccgacttgcgcctcagccacatatatattcctat
cagccaccacccatgcatacaccacctctgcaaaacacttctggttgtatgttttcccaa
gaaatgtatggcccacctctgcgttttgattctcctggtactacactcatttctcctcgt
acagctgatgactattacaactacagtgttccacaggcaagcaccaatccaacactgcct
aaaccagggtatttcacaaaccgttcagccacgccacccaccttaaagcctgcagaacca
aaagcaatgcctaaatttggacagccaggaacagcagaaggatcaaaaccacctatgtca
acaccagcacagccaagtcagccgacaacttttaagtttaaacctaacttcaagtctaat
gatggagacttcactttttcttctccccctcaagttgcaccacagccccttaatgcacct
tttaatagtagagaaagcctcctggatcttctaacatctgacaaacctttacaggatgat
agatacgttgatcaaaagccagttagtgatcccacaaacagttcaagaaatattttcaat
tttagcaataaacatattccaggcatgtctctccgagaaaacacaggacaaaacgtacac
aaaaatatgggttttgagaagagtgatacatttagtgctcaagaaccaagtaagcctgta
tttatggcttcaaattcagatttggccaacagaagtcatgaaacagaaggaggaagcacc
catggtggagatgaggatgatgacggtcctcattttgatcctgtggtaccacttcctgat
aagattgaagtaaagacaggtgaggaagatgaagaagaattcttctgcaacagagccaag
ctctttcgttttgatgcagaatctaaagaatggaaagaaaggggtattggaaatgtgaaa
atactgaaacataaagtatctggcaaatttcgtctcttaatgagacgggaccaagtgctg
aaaatctgtgcaaatcactacataaatactgatatgaaattaactccaaatgccgcatca
gataagtcatttgtatggcatgctttggactatgcagatgaattgccaaaaccagaacag
cttgcaattagatttaaaacacctgaagaagcaatgcttttcaaaaaaaagtttgaggag
gcacagaatattttaaaatctttgggatcaaatgctgacacgtctgtggctcagagcagt
ggaactgcaaaagaaacagcaaatcaggacatcaaggagcccaacagaaccacttctgga
accatgaacttgggctttcagtttctaaaagatggaacaagcagtgaacctgacagcaaa
ggcacccttacagctacatccactgcacctagcactaccatttcatttgggaaggatgct
cagcaagcctgttcttctggtggatttgggcagcatctcttgaagaaggaccaatgggtg
tgtaaagtgtgtttagttccaaatgaagcaactgtaaagaactgtgtagcatgtcaaagt
ccaaatccaggtatgtgggaaacacatggcacgccaacgaccggctatgcaagtttgaaa
ccaagtggtaacacagtgcaggacaagtttggatctccttttgctaaaaaggaaggtcag
tgggactgctctgtatgcccaacccgaaatgaagcagaagatgtgaactgctcttcctgt
cagagtccaaaacctcaaaatcaaccaaatacatccataccttctgttctggcatctgct
ggtctggagcttggttccattgctgatacaagtaagccacagaaaaatgggtttgaagga
ctttttactaaaaaggaaggtcagtgggattgtaatacttgtcttgtgaggaacgaaggt
tcttctctggcctgcgtagcctgcaaaacgccgaatccgtctgctaagccaactggtgat
gctttgccaactcctgcttttggcttgaaaagtaaattgcccgaacttggtggaggacaa
ttgggaacaggctttacgtttggtcttgagcaaggcaagacaccaccatttacatttcag
atttcttctgatactgaagctaagtctgcaaaggaaggatttagcttttcaatgcaaatg
cctgcaggtggatttaaatttgggatacaggagtctagtaaatttgggatacaggagtct
agtaaaaataccactaagaaagatgagccatccaaagagcatactactggtttcttaaaa
agcgttgatgaaaaagacaaaaaggaattgccctcagacagtggaattggattccaattt
caagaaacagcagacaaggagaaaactgactttgtttttgggcaaaatagcagcacttct
acttttgctgagcttgcaaaaagtactcctagggaaggttttcaatttggcaaaaaggac
cctaacttcaaaggcttttcaggcgcaggtgaaaagttgttttcttcacaaaattctaaa
acagatcagaaagcaaacacctcagctgaccttggtgagaaggatgatgatgtgtataag
acagaggagagcgatgatatccattttgaacctatagttcagatgcctgaaaaagtagaa
ccttttacaggagaggaagatgagaaagtgttatactcccagagagtaaagctgttcagg
tttgatccagaaacaagccagtggaaggaacgtggtgtgggcattctgaagattcttaaa
aacgaagttaatggcaaagtaagaatattgatgcggcgtgagcaagttctgaaggtgtgt
gcaaatcattggataacgacaacaatgaacttgaaacagctgtctggctcagacaaagca
tggatgtggatggccaatgacttttctgatggtgatgcaaagttggagcatctggcagca
aaattcaagacaccagagcaggctgaggagttcaaacagaagtttgaagaatgtcagagg
ctactactagatataccactgcagacaccccataaacttgttgatacaggtaggacagct
cagcttatacagaaagcagaagaaatgaagtgtggcttaaaagatctcaaaacttttctg
acagatgacaaaacgaaactgtcagaagaggaaagtggaaaccctgcttgtaccagcagt
acttctgatttggttataaagccacatgctgaaagtacaggccccactctggagtgggat
aactatgatttgcgtgaagaagcattagatgatagtgtaagcagttctgtatatgcatca
cctcttgcaagtagccctgtaaggaaaaatctgtttagatttggagagtctaccactggt
tttagtttcagctttaaatctgctttgagcccatccaaatctcctgccaaacagaatcag
agtagaacatcagtaggcacagatgaagattctgatgttactcaagaagaggaaagagat
ggacagtactttgaacctgtggtacctctgcctgatcttgtggaagtgaccagtggtgag
gaaaatgagcaagttgtcttcagccatagagccaaactctacagatatgataaagatgca
aatcaatggaaagagagagggattggggatatcaagatattgcagaactatgacaacaaa
caagttcgtatagtaatgagaagggaccaggtactaaaactctgtgccaatcacaggata
acaccagatatgaatttgcaacaaatgaaaggatctgatagagcctgggtgtggactgca
tgtgactttgcagatggggaaagaaaagtggaacttctggctgtgcgattcaagctgcaa
gatgttgcagactcatttaagcaaatttttgatgaagcaaagcatgcccaagagagagag
acactgataacacctctttcttctcgtgccaatacaccaaaggaatttccatgtggtaaa
aatgctatagctgtgctagaagaaacaaccagagaaagaactgatgtcagccatggtgat
gatacttctgatacaactgtagaggctgcagaggtgtcaagtacttctgaaactccaaca
aaaacagtggtttctcctccaaagtttgtatttggatctgaatcagtcaagagcattttc
agtaatgaaaagtcaaagacattcacatttggaaatacttcagccactggttctctcttt
ggcttcagttttaatcccccaagaaagagcgaaggccatattccagcatctcaggacaca
gcacagaaagagccagaagcctctgaaccaccaaaaatctcaaatgctactcagaagcct
gtagacagcaaggtagacaacttgccagcttcatcacaagatggaccgtctaacttctca
tttagaattctggaaaaaggatttaattttagcctctttaaatctaatccaatggccttt
tggacaagcacatcctccatgcaacctgatagtaaagctgagaagaccacaacagtgtca
gaggatgatgttccatctgatgaggttgtaatagtttacgagttaacacctacccctgaa
cagagagctcttgctgacttcctcaagctcccttcaacattcttctgttacaagaataag
cctggatatgcaagtgatgaagatgatgatgaagactatgaaacagctgttaagaaactt
aatggaagactctatcccagtgattcagaagagaaaaagaaagggcaaggtcctgtgaaa
gcaggccttgcaaagaagagtgaattcaacaatgaaagagaatgtgctgctactttggaa
aagaaaccagctcctgaggagaaagatgaaacaaaagctctgcaggttccttctgcatct
gtttgtggtgtcagtactgatactgagggtgacagtctggaagacttaaagtcagaagct
aaaattcaagaaatgaaagagaatgaagttgcaagctcaagtgacttagtctctaccagt
aaggaagaaacacccattccatcaaaagatgaggtgacagaacttgcccagtcaggtacc
agcagtgaagaatcacattccaccacagaaactgtgaaagtatcacagaccttatcaaga
gctgaagacaaacctgtagatttgtcaactaaaaagagtgattcagatggttcagagtca
acacaagaaaacagaatcatctcatttggttttggcaataccacaggcctgtcatttgca
gatctggcatccaaaagttctgaagactttgcttttggctcaaaagataaaaacttcaaa
tgggcaaatacaggagcaactgtgtttggagatacaacccataaagcagatgaagatgaa
ggtggtagtgatgatgaggtagtacatagtgatgatatccactttgagccaattgtgtcc
ttaccagaggtggaggtaaaatctggagaagaagatgaagaaattctcttcaaggagagg
gcaaaactttacagatgggacagggatgttactcagtggaaggagcgtggtgttggagag
atcaaaatactcttccatacacagaagaaatactacagagtcctaatgagaagagaccaa
gttcttaaagtctgtgcaaaccatgttatcaccaaagaaatgaacttagtgccctctgat
acatcaaacaatgctttcatttggacagccacggattatgctgatggtgaagtaaaagta
gaacaatttgcagtcagatttaaaagccaagaaatggccaattctttcaagaagaggttt
gaagaatgccagctaagcttatcagaactacagaaggggcacttgtccctggcagcagga
ctgtcaaaggacaccaaccctgttgtgtattttgaggtttctgctgatgatgaaccttta
gggcacataaccatggagctgtttgcaaatattgtacctcgaactgctgaaaacttcaga
gccctgtgcacaggagagaaaggatttggattcaagaactcccgctttcacagaatagtc
acagactttgtgtgtcagggaggagatataactaaccatgatggaacaggtggacggtcg
atttatggaacagcatttgaagatgagaatttcatagtgaaacacaccggtcctggattg
ttgtcaatggcaaataagggcagggatacaaataattctcagttcttcataacacttaaa
aaagcagaacacttggacttcaagcatgtggtatttgggtttgtgaaagatggaatggat
gttgtgaaaaagatcgaatcctttggttctcctaaagggctagtaaatggaagaattgtc
attacagactgtgggcaaatatag
DBGET
integrated database retrieval system
