Agelaius tricolor (tricolored blackbird): 139592219
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Entry
139592219 CDS
T10815
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
atrc00536
]
139592219 (COL25A1)
Glycosaminoglycan binding proteins [BR:
atrc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139592219 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139592219
NCBI-ProteinID:
XP_071287877
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MGGGGKEIKAAAAEGCASTLGKSRGAAGQDGSGKPGLGKPGCGGDRCPRRAGPVGSALAA
LLSALAAASCVYLGVRTSDLQARVAAIEGARGGFSAAAPLPPLPGFSLEQLNAMMQEKVE
RLLAQKSYEHLAKIRVAREAAPECNCPPGPPGKRGKRGRRGETGPPGQPGPQGPPGPKGE
KGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGK
DGPRGMPGLTGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGRDGQVGEPGLPGIAGEKGE
AGLKGDPGERGEKGDAGENGLKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLP
GLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGKGERGEPGIPGPKGKTGEPGSRG
PKGSKGDTGERGDTGSAGPRGPPGQKGDQGATEIIDYNGNIHEALQRIATLTVTGPPGPP
GPQGLQGSKGEPGSPGAPGVDGEQGPKGSKGDTGDPGMPGEKGGIGLPGLPGANGMKGEK
GDVGLPGAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGIDGPVGPHGPAGPKGERGEKG
AVGDPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDIGEKGEKGFRGIKGEKGEPGQPGLDG
LDAPCQLGPDGLPMPGCWQK
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaagctgccgcagctgaagggtgtgcgagcacgctg
gggaagagccgaggagccgcaggacaggatggcagcgggaagcccggcctcgggaagccc
ggctgcggcggggaccgctgcccgcggcgggccgggccggtcggctccgcgctggccgcg
ctcctctcggcgctggccgcggcctcctgcgtctacctgggggtgcggaccagcgacctc
caggccagggtcgcggctatcgaaggcgcccgagggggcttctctgccgccgccccgctc
ccgccgctgcccggcttttccttggagcagctgaacgcgatgatgcaggagaaagtggag
cgacttctcgcccagaaatcctacgagcacttggcaaaaatacgagtagcgagagaagcg
gctccagagtgcaactgcccaccaggtcctccagggaaaagaggtaagcggggaagaaga
ggagagactggacctcctggtcagcctggtcctcaaggccctcctggtccaaaaggcgag
aagggagatcaaggtgatcagggccctcggatggtgtttcctaaaatcaatcatgggttt
ctctctgctgatcagcagctcattaaacgccgcctcattaagggggaccaaggacaagct
ggacctcctggacctccagggccaccaggacccagaggtcccccaggagacaccggcaaa
gatggtcctcgtgggatgcctggcttaacgggtgagccaggaaaaccaggagaacaagga
ttgacaggacctcaggggcctccaggacaaaagggttctgttggagtgcctggtgttcca
gggagagatggacaagtgggtgaacctggtttgcctggcatagcaggagagaagggagaa
gcagggctcaagggtgaccctggagaaagaggagagaagggggatgctggtgagaatgga
ctgaagggtgacacaggagaaaagggtgaccctggctcttctgcggctggaattaagggt
gaacccggtgaatctgggcggcctggacaaaagggtgaaccaggccttcctgggcttcct
ggactccctggaataaagggtgaaccaggtttcattggtccacaaggagaacctgggttg
ccagggctaccaggaacaaagggtgacagaggagaggcaggccctgttgggaagggtgag
cgaggtgaacctggaatccctggaccaaagggtaaaacaggtgaacctggatctagaggg
cccaaagggtcaaagggtgatacaggtgagagaggtgacacaggatctgcaggtccacgg
ggaccacctggacagaagggtgatcaaggtgcaacagagataattgattataatggcaat
atccatgaagctctgcagaggattgccaccctgactgtcacgggaccaccaggaccacca
ggaccccaagggctgcaagggtcaaagggtgaaccaggatccccaggagctccaggagtt
gatggagagcagggtcctaagggctcaaaaggagacacaggtgatcctggaatgcccgga
gaaaagggaggaattggactgcctggcctaccaggagccaatggcatgaaaggcgaaaaa
ggagacgttggtttgcctggtgcccaaggtccttcaatgataggaccacctggaccacca
gggccacatggtcctccaggccccatgggacctcatggactgcctggcccgaagggcata
gatggcccagttggtccccatggccctgcaggtcccaaaggagagagaggtgagaaggga
gctgtaggtgaccctggacccagaggaccatatggcttgcctggcaaagatggcgagcct
ggcctcgatggtttccctggtcctcgaggagaaaagggtgatataggagaaaagggagaa
aagggattccgtggaattaagggggaaaaaggggagccaggccagcctggcctggatggg
ctggatgccccttgccaattgggtcctgatggattaccaatgcctggctgttggcaaaag
tga
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