Agelaius tricolor (tricolored blackbird): 139592455
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Entry
139592455 CDS
T10815
Symbol
FIP1L1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139592455 (FIP1L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139592455 (FIP1L1)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139592455 (FIP1L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
139592455
NCBI-ProteinID:
XP_071288487
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MSTGEAERLSADADGAAGDEEEEWLYGDENEAERPEEEKSSVPPPPGSEEEAAENGVVKT
KVAEAEDDSDSDSDDDEDDVQVTIGDIKTGAPQFSYGAAPVNLNIKAGGRAYGSSGAKVK
GLDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRM
GLEILPVTSTTNKITAEDKAMELRPSAEILDGRYHLLKVQQGRTGNLEKELAVQSTKPDF
TSPPALFKSGIPTNRRISGTIDVIGQSITISRVEGRRRANENSNIQVLSERSNPEVDSFT
KPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGGPPPSLI
PTIDSGHSSGYDGRPVRAFSYGSVTFPHPAGSAPSWSSLLDTSKQWDYYARREKDRERER
ERSRDRDRDRDRDRDRDRDRTRDRERDRDHSPSSSAFNSDEERYRYRDYAERGYDRHRTS
REKEDRHRDRRHREKEETRHKSSRSNSRRRHDSEEGDSHRRHKHKKSKRSKEGKEASGEP
APEQENTEAAPVE
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccggcgaggcggagcggctgtcggcggacgccgatggggccgccggggacgag
gaggaggagtggctctatggcgatgaaaatgaagcagagagaccagaggaagaaaaatct
agtgtgccacccccacctggaagtgaagaggaagctgcagaaaatggcgttgtgaaaacg
aaggtggcagaggctgaggatgacagtgatagtgatagtgatgatgatgaagatgatgtt
caagtcaccataggggatattaagacaggagctccacagtttagttatggagcagcacct
gtgaatctcaatattaaggcaggaggacgagcttatggatcttctggtgcaaaagttaag
ggactggatctggatgcaccagggagtattaatggtgtgccacttctggaagtagatcta
gattcttttgaagataaaccttggagaaagccaggggctgatctctcagattattttaac
tatggcttcaatgaagatacctggaaagcttactgtgaaaaacaaaagagaatacgaatg
ggtcttgaaattttgccagttacctcaaccacaaataaaattacggctgaagacaaagct
atggaactaagaccaagtgcagagattctcgatggcagataccatcttttaaaggtacag
caaggcagaactggaaatttggagaaagagttggcagtgcagtcgaccaaacctgatttc
acatctcctcctgccttatttaaatcaggaattccaacaaacaggcggatatctggcaca
atagatgtgattggacagagcatcactatcagcagggtggaaggacgacggcgtgctaat
gagaacagcaacatacaggttctttcagaacgctctaatcctgaagtagacagttttacc
aagccacctccatttttccctccaggagctccacctactcaccttccaccacctcctttc
ctcccaccccctccaactgtcagtactgctccacctctgattcccccaccaggtatacca
ataacagtgccaccaccaggttttccaccaccacctggcggtcctccaccttccctcata
cccacaatagacagtgggcattcttctggctatgatggtcgtcctgttcgtgcattttca
tatggcagtgtcacctttccacaccctgcaggttctgcaccctcatggtctagtcttctg
gacaccagcaaacagtgggattactatgcacgaagagagaaggatagggaacgtgagaga
gagagatcccgagatcgggatcgcgaccgggaccgggaccgagacagagatcgggaccgt
accagagacagggaaagggaccgagatcacagtccatcttcaagtgcgttcaacagtgat
gaagaacgctacagatacagagactatgcagagaggggctacgaccgccataggacaagc
agagagaaagaagacagacacagagacaggaggcacagagagaaagaagagactcgacac
aagtcatctcgaagtaacagccgacgtcgtcatgacagtgaagaaggggatagccacaga
aggcacaaacacaagaagtccaaaagaagcaaagaaggaaaagaagccagtggtgaacct
gctcctgaacaggaaaacactgaagctgcccctgtggaatag
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