Agelaius tricolor (tricolored blackbird): 139592517
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Entry
139592517 CDS
T10815
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03030
DNA replication
atrc03410
Base excision repair
atrc03420
Nucleotide excision repair
atrc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139592517 (RFC1)
03410 Base excision repair
139592517 (RFC1)
03420 Nucleotide excision repair
139592517 (RFC1)
03430 Mismatch repair
139592517 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atrc03032
]
139592517 (RFC1)
03400 DNA repair and recombination proteins [BR:
atrc03400
]
139592517 (RFC1)
DNA replication proteins [BR:
atrc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139592517 (RFC1)
DNA repair and recombination proteins [BR:
atrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139592517 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
Rad17
AAA_30
BRCT_2
AAA_5
AAA_16
AAA_33
AAA_7
RNA_helicase
RuvB_N
AAA_17
nSTAND3
AAA_18
TIP49
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
139592517
NCBI-ProteinID:
XP_071288633
LinkDB
All DBs
Position
Unknown
AA seq
1187 aa
AA seq
DB search
MAPARGPPRSPARRGRDGSAARRAAGVGAKAGAWSRERPARHGDRPAGHGDRTATAMDIR
KFFGVIPPGKRQECETVKKNEKIRNGEGPSSGKKREKETKVNSSSSEDDSKQKRTKKKRR
IIYDSDSEEEVQSVKKSKKSPEKKAAASKPGKVLKRDPVVYISETDEDDDFANKRISLKP
KENGTSGVGCPRTNTVKKEEVKPQAKSKPLSPVKQTPTSALDFFGTRSVQRSEKKLVASK
RREPSQSRDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAMLDETPQKKKARKNTE
GEQTVQSINSSPNTTAGYKQSEGVKATDSAGAAMNYSAKPQAKSEQSKGSCLPPQSSNGK
KEEIAGKERGAQNALRGKAASGKEEKTTPKKEKVSPKKTESISPEDSEKKRNNYQAYRSF
LNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKT
NYLVMGRDCGQSKCEKASALGTKIIDEDGLFDLIRTMPGKKSKYELAAETEAKKVESKPK
KTPEKAEAGKRNFSPYKREANNKKYKSTPEKGETIRSVKKETTAVRKLTDFKRQTVEEKE
APKPKGNLVSEVNEDGTEKLLWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKNTLE
DGQAKPSKTGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDTRSKNSL
KEVIAESLNNTSIKDFCSGASSSVSGKHVLIMDEVDGMAGNEDRGGIQELIALIRHTKVP
IICMCNDRNHPKMRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAA
NQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFATGEEAARMSL
IDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAADSICDGDIVDRQIRS
KQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKHDRIIQELAMHMSLRT
QTCKRTVNMEYLSYLRDALVQPLRDFGADGVQQAITFMDSYCLMKEDVENIMEISTWGGK
PSPFSKLDPKVKAAFTRAYNKEAHLTPYSLSAAKASKRQSGSAATLELSEDLTVEEIQSD
EDEQDTVDSDAMIKQKKGKSSKLPKREKNEETTKKEGKRKEKTRHLE
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggccccggcccggggcccgccccgcagccccgcccgtcgcggccgtgacggcagcgcc
gcgcgccgggcggcgggagttggcgcgaaggcgggagcatggagccgggagcgtcccgct
aggcacggggaccgtcccgccgggcacggggaccgcaccgccaccgccatggatatccgg
aaattctttggtgttatacctcctggaaagcgacaagagtgtgagactgtgaaaaagaat
gaaaaaattagaaatggtgaaggaccctcaagtgggaagaaaagggaaaaggagactaag
gtgaatagttcatccagtgaagatgattccaaacagaagcggacaaaaaagaagagaaga
ataatctatgattcagattcagaagaggaggtgcagtcagtgaaaaaatccaagaagtca
cctgagaaaaaagcagctgcttctaaacctggtaaagttctaaagcgggatcctgttgtt
tatatttcagagacagatgaagatgatgattttgccaataaaagaatttccctgaaaccg
aaggagaacgggacatcaggggttggttgtccaagaacaaatactgtgaaaaaagaggag
gtaaaaccacaagctaaaagcaaacccctctctccagtgaaacagactcccacctctgca
cttgatttctttgggacaaggagtgtccaacgctcagaaaagaagctggtagcaagtaaa
aggagagagccttcacagagcagagacagcacactagatgatgaggctattgctaggcaa
ctgcagcttgaagaagattcagagctggagagacagctgcatgaagatgaagaatttgct
agaactctggccatgttggatgaaacaccacagaagaaaaaggctcggaaaaacacagaa
ggagagcaaacagtacagagcatcaacagcagccctaatacaacagcagggtacaagcag
tcagaaggagtgaaagcaacagactcagctggtgcagccatgaattactctgcgaagcca
caagctaaatctgagcagtcgaaaggttcttgtttacccccacaatcatctaatggtaaa
aaagaagagattgctggaaaggaaagaggtgctcaaaatgcactaagaggaaaagcagct
tcagggaaagaagagaagacaacaccaaagaaggagaaagtttctcccaagaagactgag
tctataagtcctgaggactctgaaaagaagcgaaacaattaccaagcttaccgaagcttc
cttaatcgtgagggtcccaaagcactgggctccaaagagatacctcagggagctgagaac
tgcttggaggggctgacatttgtaattacgggagttctggagtgcatcgagagagatgag
gccaagtctctgattgagcgttacgggggaaaggtaaccggcaatgtcagcaagaaaaca
aattacctggtgatgggccgggactgcggccagtccaagtgtgagaaggcatcagcttta
ggtacaaaaattattgatgaggatggtctgtttgatcttattcgaactatgccaggcaaa
aagtcaaaatatgagctggcagctgaaacagaggcaaagaaagtggagtcaaaacccaaa
aagacaccagagaaagctgaggctgggaaaaggaattttagcccctacaaaagggaagct
aataataaaaaatacaagtctactcctgaaaaaggagaaaccatcagatctgtcaagaaa
gaaaccactgctgttcgaaaacttacggactttaaacgtcagactgtagaggagaaagaa
gccccaaaacctaaggggaacttggtttctgaggttaatgaagatggcacagagaaattg
ctgtgggtagataaatataagcctgtatctcttaaggcaattattggacagcagggtgag
cagagctgtgccaataaactgctccggtggctcagaaactggcacaagaacaccttggaa
gatggacaagcaaaacctagtaaaactggaagcaaagatgatgggacaggctttaaagca
gcattactttctggtccacctggagttggtaaaactactacagctgctttggtttgtaag
gagctggggtatagctatgtggagctgaatgccagcgacactcgcagcaagaacagtctg
aaggaagtcattgctgagtcacttaacaacaccagcatcaaagacttctgttctggtgca
tcttcatcagttagcgggaagcatgtattgatcatggatgaagtggatggtatggcaggc
aatgaagacagaggagggattcaggagctgattgctttgatccggcacacgaaggttccc
atcatttgcatgtgcaatgatcgcaaccaccccaagatgcgctccttggtccactactgc
ttggatcttcgttttcagagacctcggctagaacagatcaaaggtgccatgatgtctatt
gcatttaaagaaggtttaaaaattcctccacctgctatgcaagagataatcctggcagca
aatcaggacatcagacaggttttacataatcttaatatgtggtgtgcaaaagacaaatca
ctgacttatgatgaggctaaaacagatgccagcagagccaaaaaggacatcaaactgggc
ccctttgatgttgtccggaaggtttttgctactggagaagaggctgcccgtatgtctctt
atagacaaatcagatcttttcttccatgattattcactagcacctctctttgtccaagag
aactatgtgcatgtgaaaccagctgctgctggaggtaatttaaaaaagcacttggtgctc
ttgagcagagcagctgatagtatatgtgatggtgatatagtggacagacagattcgtagc
aagcagaactggaatcttcttccaacacaggctatttatgcaagtgttctcccaggggag
ctgatgaggggttacatgtcccagtttcctgtctttcccagctggctggggaaattttca
tccacaggcaaacacgatcgtatcattcaagaactggcaatgcatatgagtctcagaact
cagacatgcaagaggacagtaaatatggaatatttgtcatatttgcgggatgcacttgtc
cagcccttgagagactttggagcagatggtgtacaacaagctataacatttatggactcc
tactgcttgatgaaagaagatgttgaaaatatcatggaaataagcacgtggggaggcaaa
cccagtcctttttcaaagctggatcccaaggtcaaagcagctttcacacgtgcctacaac
aaagaggcacatctgactccatattcccttagtgctgccaaggcatccaaaaggcagtcg
ggatctgcagcaaccttagagctgagtgaagacttgactgtggaagagatccagtctgat
gaggatgagcaggacactgttgacagtgatgcaatgattaagcaaaaaaaggggaagtct
tccaagctgccaaaaagagagaaaaatgaagaaacaacaaaaaaagaagggaaaagaaaa
gagaaaacaagacatttagagtaa
DBGET
integrated database retrieval system
