Agelaius tricolor (tricolored blackbird): 139592713
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Entry
139592713 CDS
T10815
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139592713 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atrc03021
]
139592713 (PCF11)
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139592713 (PCF11)
Transcription machinery [BR:
atrc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139592713 (PCF11)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
139592713 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
139592713
NCBI-ProteinID:
XP_071288924
LinkDB
All DBs
Position
Unknown
AA seq
1701 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTSQSESKGNKTAQAEKQNSTKSEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSKNQECESAKVSDISKRDPRLKRHLQDKSEGKEEEIKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEPFAERSRRHSPVSGTTRPFAENLSPLESRRRLEDQRATKGARGSDPYDSWGESDEFR
DALRQQGKSTAEFQKTDGDALCRFDNREERQLLGQAGVREEPRSPFTERFKRARYEDPEK
APFPESPGSRFGGIEGKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAGGSSS
RIDGPAGQAAMRFEGPLVGTGASQFDGPLAGAGGAGALRFDGPPGQLAGSLRFEGPSGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGARFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGSLRFEGPHLQPLGPHGQLGGGLRFEGPHGQPM
GPHGPSGGGFRFEGPHGPSGGGLRLDGPRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAG
PRFDGCQGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQTQARFETAIPQRFDGPHQPA
SRFDLPLGLQGSRFENVANHPASRLEMSPYGQGGPFGEHPGQGYNGPAHGMQFQRPDIFD
GSPGPNFNGPAGPGAQNFPLRAAGHYFEEKGLQGPQYGNFSNMPMGGNQVSLMSAQPGPY
GQGQQYLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQA
NETSAQPNAEEEDDDQNEDQNVPDLTNFVVEELRQRYDSVINRLYTGIQCYSCGMRFTTS
QTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAH
EEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKI
YHPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPEDTPPP
ACAEESTPASTEIKTEPEESV
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaaaccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcacagcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcagttgcttgcaaagcaaaaacagttgttagaactgcagcaaaaaaaa
ctagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcag
ggatcatctagtatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaaaccacctcatcaaactgctgtgcaatctgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtgaacagggatcctcggcttaatagaatg
ggtcaacattcttctcatactaaagatcagtctcacaggaaagaattttcaccgagtgtg
accagtcagtctgagagcaagggaaacaaaacagcacaggctgaaaaacagaactcaacg
aagtcagaaaaatcaaaagcaagtgaaaaaacacagaaaaaagaacttgaacagtccaaa
gcaaaatctaaatcaccatcccctttgaaaaataagctgcccgatactaaagacagcaaa
aaccaggaatgtgaaagtgctaaggtgtctgacatcagtaagcgggatccaagactgaaa
agacatcttcaggataagtcagaggggaaggaagaggagatcaaagaaaagaggagaagt
acagagaagaaggaaaaagaggagcataagacttgtgaacatagaccagtagggagcaga
aataaagtgattaatggtgctgttcagaaacaagatacaactacagaggagtcagaaaaa
cagggtgggaaacaaggaagatcaagtagtagaaaacgttcacgatcacgctctcctaag
gcaagatcaccatctacacactctccaaaaagacgagagaggagatcacctaaaagaaga
cttcggagtttatctcctacttcatcaactcctaaaattggaaagatacgtcagataggc
cctaagcagtctcacgttgaagaaggcacacaagcagcaagagatgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagctcaagaagaa
agaccccaagagacagccacccagcattctgcaaaagcttctccagatccaaaggagaat
gcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaagt
aaaaactcacagcagaatgatgaacaccaagcactggttaaatcccctcaccaaagacat
cgggaaaactggcctgctggtaaaggaattctatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaaga
gaattacttaagaaggctaatgaccgcttgacatctggtgaaataacacaagatgagttt
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttctatca
gatgcagaattaacatattacgaacataaagctaaactaaaaaggacacaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacctgat
gcactgctttctggaatagaatgtgagcaggcaaaagccaagcggggggtacagtttgac
agaaaagagccatttgcagaaagatcaaggagacactctcctgtaagtggcactacaaga
ccgtttgctgaaaacctgtcaccacttgagagtcgacgaagacttgaagaccagcgtgct
actaaaggagcaagaggttctgatccttatgacagctggggagaatcggatgaatttaga
gatgctctcagacaacaagggaaaagcacagcagagttccagaaaacagatggtgatgca
ctctgtcggtttgataatcgtgaagaaagacagcttcttgggcaagctggtgttcgagag
gaaccaaggtcaccgttcactgaacgtttcaaaagagctaggtatgaagatccagagaaa
gcaccatttccagaaagtccaggatcaagatttggaggtattgaaggaaagcagaggata
agtgcactgatggaagacagacctctgtttgatggctcacctagaccgactgctgcaagg
gttggggtagatggacaaggcagtccttttgttgatggtcctgctggtggttcaagttcc
agaattgatgggccagctggacaggctgctatgagatttgaggggcctttggtggggaca
ggtgcatctcagtttgatggaccactggcaggagcagggggagctggagccttaagattt
gatgggccaccagggcagctggcagggtccctgagatttgaaggaccctcaggccaggtt
ggtggaggaggtccgctgcggttcgagggacctcttgggcctctgcggtttgaggggcct
gcagggcagcctgtaggtggggctagatttgaaggtcctggagttggtctcaggtttgag
ggtcctcatggtcagccttcaggtggtctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccggggggtagcctcaggtttgaggggccacatttacagccgttg
gggccccatggacaacttggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatgggccatcaggtggtgggttcaggtttgagggaccacatggaccatcaggt
ggtgggctgagactggacggaccacgtggtcagccgggtctaggtcctaggttgattgat
ggaccagtacaccagggagctggtggacttagatttgatggtcctcttggtcgggctggt
ccaagatttgatggctgtcagggagctggatttgatggccagcctggacagctgtctctc
ttgcaaagatttgatggaattcatggacagcctggtccaaggttggcacctggccaacag
acacaagcaagatttgaaacagccatacctcaaagatttgatggacctcaccagccagcc
tctaggttcgacttgcccctcggccttcagggttcacgttttgaaaatgtagctaaccat
cctgcctcaagactagaaatgtcaccgtatggacaaggtggtccgtttggtgaacatcct
ggccagggctacaatggaccagctcatggaatgcagttccagagacctgatatatttgat
ggttcgcccggaccaaatttcaatgggccagctggcccaggagcacagaacttcccactg
agagcagctggacattacttcgaagagaaaggtctccagggtcctcaatatggaaatttc
agtaatatgccaatgggaggtaatcaggtttctctcatgtctgctcaaccaggaccttac
ggccaaggtcagcagtatttgccaaatcctggaagttttgtccagaaccctgcaggagcc
ctttcccattcatatcctgataaccaccttggacaggttgatgtgaatgagttgtttgct
aaactgctgaaaacagggatcctcaaattgtctaaaactgattccacttcagcacaagcg
aacgaaacatcagcccagccgaatgctgaagaagaagatgatgatcagaatgaagatcag
aatgttccagacctcactaacttcgtagtcgaagaacttagacagcgttacgatagtgtt
ataaatcggctgtacactggaattcagtgttactcctgtggaatgagattcactacttca
cagacagatgtttatgcagatcatttggattggcattatcgccagaaccggacggagaaa
gatgttagcagaaaaattacacacaggagatggtactacagtttaacagactggattgaa
tttgaagaaatagcagatctagaggagcgtgctaaaagccagttctttgaaaaagctcat
gaagaggttgtgttgaagacgcaggaagctgccaaagagaaggagtttcagagtgtccca
gctggaccagctggagcagtggagagctgtgaaatttgccaagaacaatttgaacagtat
tgggatgaggaagaggaagagtggcacttgaagaatgctatcagggtagatgaaaagatt
taccatccatcttgttatgaagattaccagaatacatcatcatttgattgcacaccatct
cccagcaagactccttcagaaaatccactaaatataatgttggacattgttaaacaagaa
acagaagagtcctgtgactcacctaaaatcaaagaagaacctgaagacacccctcctcct
gcctgtgcagaagagagcacacctgcatctacagaaatcaaaacagaacctgaggagtct
gtttaa
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integrated database retrieval system
