Agelaius tricolor (tricolored blackbird): 139593514
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Entry
139593514 CDS
T10815
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04820
Cytoskeleton in muscle cells
Brite
Glycosaminoglycan binding proteins [BR:
atrc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139593514 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
139593514
NCBI-ProteinID:
XP_071290565
LinkDB
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Position
Unknown
AA seq
1460 aa
AA seq
DB search
MMSSVQKVTLLILAVFQPSVILAQQVVTGCTHLGQAYADRDVWKPEPCQICVCDSGSVLC
DDIICDDQELDCPNPEIPFGECCPVCPQTTTPPPRTPGVVSRGPKGDPGSPGVPGRNGPP
GPPGQPGSPGAPGPPGICQSCPSISGGSFSPQYDSYDVKAGGAGIGYPQPISGFPGPPGP
SGPPGPPGHAGPPGSAGYQGSPGEPGQPGPPGPPGPVGMIGPVGPPGKDGEPGRPGRNGD
RGIPGLPGHKGHPGMPGMPGMKGQRGFDGKDGAKGDSGAPGPKGETGLPGVNGAPGQPGP
RGPAGERGRPGNPGGPGAHGKDGSPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGPAGV
SGSPGERGEPGPQGNAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGA
SGNPGAKGSPGDPGKDGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGT
PGERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGGPGLPGMRGLPGI
PGSPGSDGKPGPPGNQGESGRSGPPGPPGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGP
PGPPGLAGKNGDVGLPGPPGPTGASGERGEPGPAGPPGLQGLPGGPGPAGENGKPGEPGP
KGDIGGPGFPGPKGENGIPGERGAQGPPGPPGTRGGPGPAGTEGAKGPPGPPGPPGGTGL
PGLQGMPGERGASGSPGPKGERGEPGGKGADGLPGARGERGNVGPIGPPGPAGPPGDKGE
TGPAGAPGPMGSRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGA
AGPQGGPGAPGPPGPQGIKGDRGSPGGPGAAGFPGARGLPGPPGNNGSPGPPGNAGPAGK
DGPPGPPGSSGAPGGPGPAGIRGEPGAPGEKGPPGARGERGAPGEPGPQGIVGGRGNTGL
PGLRGPSGPPGMAGAKGEDGKPGTNGIPGERGAPGPQGPIGQRGLPGEPGRDGNPGSDGL
PGRDGSPGGKGDRGDNGSPGPPGPPGHPGPAGNAGAPGKAGERGFQGPPGPPGSTGPAGA
RGPAGPQGPRGDKGEPGERGSNGIKGHRGFPGTPGLPGPPGPLGPQGAIGGPGASGARGP
PGPAGPPGKDGTSGYPGPIGPPGPRGTRGESGPAGPPGQPGLPGPAGPPGPCCGGGAAAL
GAGEKGPVSYGYEYRDEPKENDINLGDIVSSMKSINNQIENIISPDGSRKNPARNCRDLK
FCHPELKSGEYWVDPNQGCKMDAIKVYCNMETGETCLNANPRTVPRKNWWTSGNSGKKHV
WFGESMNGGFQFSYGDPELPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDHDSGNV
KKALKLMSSTESEIKAEGNSKFTYAVLEDGCTKHTGEWGKTVFEYRTRKTVRLPVVDIAP
LDIGGPDQEFGVDIGPVCFL
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctctgtgcaaaaagtaactttgctcattcttgccgtgtttcaaccctcagtt
attttggcacaacaagtcgtcacaggatgtacccatcttgggcaggcttatgctgacagg
gatgtttggaaaccagagccatgccaaatctgcgtgtgcgactcgggatctgttctctgc
gatgacatcatctgtgatgatcaggagctggactgccccaacccagagatcccttttgga
gagtgctgtccagtttgtccacaaacaacaacaccacctccaagaactcctggagtagtc
agccgaggccccaagggagatcctggttctcctggagttccaggcagaaatggtccccct
ggcccaccaggacagccagggagccctggagctcctgggccccctggaatctgccagtca
tgtcccagtataagtggaggtagtttttctccacagtatgactcctatgatgtgaaggct
ggtggagctggtatcgggtacccacaacccattagtggctttccaggaccccctggcccc
agtggcccccctggcccacctggacatgcaggtccccctggctctgctggataccagggc
tcccctggagaaccaggacaacctggccctcccggacctccaggccctgttggaatgata
ggcccagttggtccaccaggaaaagatggagaaccaggaagaccaggcaggaatggagac
cgtggaatccctggattaccgggtcacaaaggacaccctggaatgcctgggatgcctggg
atgaaaggccaacgaggttttgatggaaaagatggtgccaaaggtgacagtggtgctcct
ggtccaaagggtgaaactggtcttcctggagtaaatggagcaccaggccaaccgggacca
agaggtccagctggagaaagaggaagacctgggaatcccggtggccctggtgcccatggc
aaagacggatctccaggagcagcaggcccacctggtcccccaggtccccctggaaccgca
ggatttccaggctctccaggttttaagggtgaagctggtcctcctggtcctgctggtgtt
agtggtagtcccggagagaggggagaacctggtcctcagggaaatgctgggccacctggg
cctcagggccctcctggaagagctggaagccctggcaacaagggtgaaatgggaccttct
ggtattcctggtgctcctggtctgccaggaggccgtggtcttccaggtcctccaggtgca
agtggaaaccctggagcaaaaggcagtccgggagaccctggtaaggatggtgcaaaagga
gatccaggcccaaaaggcgagcgcggtgaaaacggcaccccaggtgctcctgggcctcct
ggtgaggaaggaaagagaggtgcaaatggagaacctgggcagaacggagtacctggtacc
cctggagaaaggggctcccctggcttccgtggcttacccggtagtaatgggcttccaggc
gaaaagggtcctgcaggtgagcgtggcagcccaggtccccctggccccagtggacctgca
ggagagcgtggacaagatggaggcccaggtcttcctggaatgagaggcttgcccggaatt
ccaggaagccctggaagcgatgggaagcctggccctcccggcaatcagggtgaatctgga
cgctctggcccacctggccctccaggcccccgtggccagcctggtgtgatgggtttccct
ggtcctaagggcaatgagggtgcaccaggcaagaatggagaaagaggccctggtggacca
cctggaccacctggtcttgctgggaagaatggtgatgttggccttccaggtcctccagga
cctactggtgcttctggagagagaggagaaccaggaccagcaggcccacctggcctccag
ggattgcctggtggaccaggaccagctggagagaatggaaagcctggagaaccagggcca
aaaggtgatattggaggacctggattcccaggccctaagggtgaaaatggtatcccagga
gaacgtggtgcacagggtcctccaggacctcctggaacaagaggtggaccaggtcctgct
ggcacagaaggtgccaagggtcctcctggcccaccgggtccccctggaggcacaggactg
cctggcttacagggaatgccaggagaaagaggagcttctggaagccctggaccaaaaggg
gagaggggagaacctggtggtaaaggtgctgacggccttcctggtgcaagaggagagaga
ggcaatgtaggtcccattggccctcctggtcctgctggcccacctggagataagggagag
actggcccagcaggtgcccctggcccaatgggttcccgtggaggtcctggtgaacgagga
gaacaaggtcttcctgggcccgctggcttccctggagccccaggccaaaatggggaacct
ggtggcaaaggagaaagaggcccccctggtctgagaggagaggccggaccccctggagca
gctggtccacagggcggccctggtgccccaggtccaccaggtccccaaggaataaaagga
gaccgtggatctcctggcgggcctggtgctgctggtttccctggtgctcgtggtctacct
ggtccccctggtaacaatggtagcccaggtccccctggtaacgcaggccctgcaggcaag
gatgggcctcctggaccccctggcagttctggtgctcctggaggtccaggacctgctgga
atcagaggtgagcccggcgcaccaggagaaaaagggcccccaggagcccgaggagaaagg
ggggctccaggtgagccaggtcctcaaggcatcgttggcggccgggggaacacgggtctg
ccaggcctgcgtggccccagcggcccacccgggatggcaggggccaagggtgaagatggt
aaaccaggcaccaatggtatcccaggagaacgtggtgctccgggtccccaaggtcctatt
ggacaaagaggcttacctggagagcctggcagagatggtaaccctggctccgatggcttg
cctggacgtgacggatccccaggaggcaaaggtgaccgtggtgacaatggctctcctggc
cctccaggaccccctggccatcctggacctgcaggtaatgctggtgcgcctggaaaagct
ggtgaaagaggatttcagggtccacctggccctcctggctctactggtcctgctggtgct
cgtggtcctgctggtcctcaaggtcctcgtggtgataaaggtgaacctggtgaacgaggg
agcaatggcataaagggtcacagagggtttcctggtacccctggtctccctggccctcct
ggtcccctgggtccacaaggtgcaattggaggtccaggagcttcaggtgcaaggggtccc
ccaggcccagctgggccacctggaaaagatggtaccagtggctacccaggtccaattggt
cctcccggccctcgtggtaccagaggtgaaagcggccctgccggtccaccagggcagcct
ggtcttcctggtcctgctggacctcctggcccatgttgtggtggtggtgcagctgccctg
ggtgctggtgagaaaggtccagtttcctatgggtatgaataccgagatgagcccaaggag
aacgatatcaatctgggtgacatcgtctcttcaatgaaatccattaacaaccagattgaa
aacatcattagtcctgatgggtcacggaagaatccagctcgtaactgccgagacctgaag
ttctgccatcccgagctcaagagtggagagtactgggttgatcctaaccaaggctgcaag
atggatgctattaaagtctactgcaatatggaaactggtgagacctgcctcaatgctaac
cccaggactgtgccaaggaaaaactggtggaccagtggaaacagtggaaagaaacacgtt
tggtttggagagtctatgaatggaggcttccagttcagctatggagatcctgagctccca
gaggatgtctctgaagttcagctggccttcctgcgcatcctctccagccgtgcctcccag
aacatcacctaccactgcaagaacagcattgcctacatggaccacgacagtgggaatgtt
aaaaaagctctgaaactcatgagctctacagaaagtgagatcaaggctgaaggaaacagc
aaattcacatatgctgttctggaagatggctgcactaagcacactggtgagtggggtaaa
acagttttcgaatacaggacgcgcaagaccgtgaggttgccggtggttgatattgcacca
ttagatattggtggtcctgatcaggaatttggcgtggacattggcccagtctgcttctta
taa
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