Agelaius tricolor (tricolored blackbird): 139593555
Help
Entry
139593555 CDS
T10815
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139593555 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atrc03041
]
139593555 (SF3B1)
03036 Chromosome and associated proteins [BR:
atrc03036
]
139593555 (SF3B1)
Spliceosome [BR:
atrc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139593555 (SF3B1)
Complex B
139593555 (SF3B1)
Complex C
U2 SnRNP specific factors
139593555 (SF3B1)
Chromosome and associated proteins [BR:
atrc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
139593555 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
139593555
NCBI-ProteinID:
XP_071290671
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtcacttctattgcagct
actgaattggaagatgatgatgatgactacccttccacaagtctgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacagtctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaagaaattgtccagttgggatcaagcagag
actcctgggcacaccccatctctgagatgggatgaaaccccaggccgtgcaaagggaagc
gaaactccaggtgccaccccaggctccaagatctgggatccaactcccagccatacccca
gcaggagctgcaacgcctggccgggacacgcctgggcacgcaacaccgggccacggaggt
gccacttccagtgcacgcaaaaatcgatgggatgaaacccccaaaacagaaagagatact
ccgggccatggcagtggctgggctgagacacctcgtacagacagaggtggtgactccatt
ggtgagacaccgaccccaggagcgagcaaaaggaagtcccgctgggatgaaacacctgcg
agccagatgggcggcagcactcctgttctgacacctggcaaaacacccattggaacccca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgctgggagagggaaattgatgagagaaacagaccactttctgatgaggaa
ttggatgctatgtttcctgaaggttataaggttctcccacccccagctggttacgtgccc
atccgtactcctgctcggaagctcacggcgactcccacgccgctggggggtatgacaggg
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatcgggcaac
ctgccgttcctgaaaccagatgatatccagtacttcgacaagctgctggttgatgtcgat
gaatcgactctgagtcctgaggaacagaaggagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcccatgcgaaaggctgcgttgcggcaaattaccgataaagct
cgggaattcggagcagggccactgttcaatcagatcctgcctctgctgatgtctccaaca
ctcgaagatcaggagcggcacttgcttgtcaaagtcatcgacagaattctttacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactacgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gcaggtttggcaaccatgatctccacaatgcgacctgatattgataacatggatgagtat
gtcagaaatacaacggctcgagcctttgctgttgttgcatctgctctgggcattccttct
ctgttacccttcctgaaagctgtctgtaaaagcaaaaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgagcatgggctggtggatgagcagcagaaagttcgcacc
atcagtgctttggccatcgctgctttggctgaggcagccactccctatggtattgagtca
tttgactctgtcctgaagcccttgtggaagggtatacgtcaacacagaggaaagggtttg
gctgcgttcttgaaggcgattggttacctgatcccactcatggatgccgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttaaaggtggtaaagcagtgttgtggtacggatggtgttgaagca
aactacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacgactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaagatggtcatggaaacaattgagaagataatgggaaatctgggagcagcagac
attgatcacaaactggaagaacagctcattgatggtattttgtacgccttccaggaacag
acaacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agggtgaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggccgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatacttggagcactgaaggctattgtgaacgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccacggttgacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcatgatgtattggccacactgctcaacaacttgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacccttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatctggta
cacagacaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggtttggc
tgtgaagattctcttaatcacttgttaaactatgtgtggcccaacgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagtggctattgggccc
tgcaggatgttacagtactgcttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctacaattcaatctacatcggctcacaggatgctctgatagcacat
tacccaagaatctataatgatgaaaagaacacctatattcgttacgaacttgattacatc
ttataa
DBGET
integrated database retrieval system
