Agelaius tricolor (tricolored blackbird): 139594835
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Entry
139594835 CDS
T10815
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
139594835 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atrc04131
]
139594835 (VPS8)
Membrane trafficking [BR:
atrc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139594835 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_WDR3_1st
WDR55
Beta-prop_HPS5
DUF5770
Motif
Other DBs
NCBI-GeneID:
139594835
NCBI-ProteinID:
XP_071293456
LinkDB
All DBs
Position
Unknown
AA seq
1388 aa
AA seq
DB search
MAAALEPAEAEPCPEPPVHRLSVAELDRELDSRSELIDDKEFDIPQVDTPPTLESILNET
DDEEESFILEDPFLLNLDNTDAHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRL
SLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQALRLCLGSTAVGA
QYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPT
LAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVDLRDHPITQYSL
LAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAFCRGDVV
YFLLVKRDDSGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEELET
IEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQVFYLGTKSVHVMTL
RNWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLTGDTSKRRAVIADRMVEILLHYT
DRTLKKCPDQGKIQIMEQHFQDVVPVIVDYCLLLQRMDLLFNQIYDKMSENSVAKGIFLE
CLEPYILSDKLMGITPQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVVLCWENR
LYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISCCLAGRA
YPLGDIPEDLVPLVKNQVFEFLIRLHSAEGSVDEEVYPYVRTLLHFDTREFLNVLALTFE
DFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTLFD
QVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYERQL
RYDKIIGCYLRDPLRKEEVFNYIHNILSMPGYSAEEKQLVWQKALDHIEELLVLSPGKAA
DLAAIHFSEQLESIISNLQDQFLLFQFLRSLLDPREGINQDLLHLPPCITEQFIELLCQY
SPDQVLETLKVLECCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKLLV
LTQDDESSAEPSLLENIEDTLMKTIALCQRNSHSLDQQQREALWFPLLEAMMSPQKSSGS
SQCPHSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGMLDTFNY
EQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADEIIVFSC
GHLYHSLCLLSKECGVVTKGLMRWMCYKCNSSSKGGKLSENFSELKKGTAASLAQMSSES
VLDPQQIQAFDQLCRLNRGTSRLALLTELARGDKHGLLSVSHGDPATSSVFQNENFQLHL
TPPPLAEE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagccctggagccagcggaggccgagccgtgcccggagccgcccgtgcaccgg
ctgagcgtggcggagctcgaccgtgaactggactctcgcagcgagctgattgacgacaaa
gaattcgacattcctcaagttgatacccctccaacgctggagagcatcctaaatgagact
gatgatgaagaggagtctttcattttggaggatccctttctcttgaaccttgataacaca
gatgcacactcctatgacacctcttctgtggccagctctgacagtggggacaggacacac
ctgaaaaggaagaaaaaactcccagattctctctcactccatggatcagtgatccggctc
tcactcctgaaaggaatttctgcccaaatagtgtctgcagcagacaaagtggatgctggc
ttgcccactgcaattgcagcatcaaatctgatagcagtggggacttcccatggcttagca
ctgatatttgatcagaaccaggctctccggctgtgtctgggcagcaccgcagttggggct
cagtatggggccatctctgctctcagcatcaacaatgactgctccaggctgctctgtggc
tttgcaaaaggacagatcaccatgtgggacctggccagtgggaagctgctgagatcaata
acagatgcccaccctccaggaacagccattttgcacatcaagtttacagatgatccgacg
ctcgcaatttgcaatgacagcggaggctccgtgtttgaactgtcatttaagagggtaatg
ggagtgaggacgtgtgagtctcggtgtctcttcagtggctccaagggggaagtttgctgt
attgagccattacatgcaaaggttgatttgagagaccatcctatcacccagtattcactg
ctggctatggcctccctcaccaagatcctggttattggcctgaagccatctttgaaagtg
tggatgacctttccctacggccgtatggacccttccagtgtccccctgctggcgtggcac
tttgtggctgtgcagaactcggtgaaccccatgcttgccttctgtcgaggagatgtcgtg
tacttccttctggtcaagagggatgatagtggtgcaatacatgtcacaaagcagaggcag
cttcatctgcactatgatctcatcaactttacttggatcaactcaaggacagcggtgctg
ctggacagtgtggagaagctgcacgtcatagaccgtcagactcaggaggagctggagacc
atcgagatctcagaggttcagctggtctacaacagcagccacttcaagtctctggccaca
gggggcaatgtcagcgaggccttggcactggttggagagaaagcttgttaccagtccatc
agcagctgtggtggtcaggtcttttaccttggaactaagtctgttcatgtcatgacattg
agaaactggagagagagagttgaccaccttctgaaacaagaacgtctcacagatgccctg
gctcttgcttggtccttttatgaaggtaaagcaaaggctgttgtaggcttgactggggac
acgagcaagaggagagcagtcattgctgacagaatggtagaaatccttctccattacacc
gatcggactctgaagaaatgtcctgaccaaggaaaaatccagattatggagcagcacttt
caggatgtggtgcctgtcatcgtggattactgcctcctgctgcagcgcatggatctatta
tttaatcagatatatgacaagatgagtgagaactctgtagccaaaggcatctttctggag
tgcttggagccatatatcttgagtgataagctgatgggaatcacacctcaagtgatgaaa
gacttgctgcttcacttccaagacaagaacaggttggaaaacttggaagcctgcattgta
catatggatatcaccagtttagacatccagcaggtggttgtgctgtgctgggagaaccgc
ctgtacgatgccatgatctacgtctacaacagcggcatgaacgacttcatcagccccatg
gagaagctgttcaaagtcattgctcctccactgaatgctggaaagtctctcacagatgag
caggtggtgatgggcaacaaactgcttgtgtatataagctgctgcttggcaggccgtgca
tatccattgggtgatattcctgaagatctggtgcctctggtgaaaaatcaggtgtttgag
ttcctgatcaggctgcactcagctgagggctctgtggatgaggaggtgtatccctacgtc
cgcaccctgctgcacttcgacacgcgggaattcctcaacgtgctggctctgacttttgaa
gacttcaagaatgataagcaagctgtggaatatcaacagagaattgttgacattcttctg
aaagtcatggtggagaattctgacttcaccccatcacaggttggctgtctctttaccttc
cttgcccggcagctcgccaagcccaacaacaccttgtttgtcaacaggacactgtttgac
caggtgctggagttcctgtgcagcccggatgacgactcccggcattccgagagacagcag
gtccttctggagctgctccaggcaggagggattgtgcagtttgaggagagccgccttatc
caaatggcagagaaggctgagttctatcagatctgtgagttcatgtatgagcggcagctt
cgctatgacaaaatcatcggctgttacctgcgggatcccctgaggaaggaagaagttttc
aactacatccacaacatcctgtccatgcctggctacagtgctgaggagaagcagctggtg
tggcagaaagctttggaccatatagaggagctgctggtgctgagcccaggtaaagcagct
gacctggcagccattcacttcagcgagcagcttgagagcatcatctccaacctgcaggac
cagttcttgctcttccagttcctgaggagtctccttgatccaagagaaggcattaaccaa
gacctgctacacctcccaccctgtatcactgagcagttcatcgagctgctctgtcagtac
agcccagaccaggttttggagacactcaaagttctggaatgctgcagactggaggaaacc
atccagataacccaaaaacatcagctccatgaggcttcctcgtatttactagagaagaag
ggagatatccatggtgcctttttggttatgcttgagcgattgcagagcaagttgctggtg
cttactcaagatgatgaaagctcagctgaaccctccttgctagaaaatattgaagatact
ttaatgaagacaattgctctttgccagaggaattcacacagtttagaccagcaacagcga
gaggccctctggtttcccctgcttgaggccatgatgtccccacagaaatcctctggttca
tcacagtgtccacactctgaatctttgaagagtttgacaatgcaagtgctgaacaacatg
gctgcatttattgctctgccctcaatcctgcagaggattctccaggatccagtttatgga
aaagggaaacttggagaaattcaagggcttgtcttgggaatgctggacacttttaactat
gaacaaaccctgctagagacaaccacgagccttttaaaccacgatctccactggtccctg
tgtaacctgagagcctctgtcaccagaggccttaccccaaagcaggattactgctgcatc
tgtctccaacagtacaaaaggaggcaagaaactgctgatgagatcattgttttcagctgt
ggccacttgtaccactcgctgtgcctgctgagcaaggagtgtggggtggtcaccaagggc
ctcatgaggtggatgtgctacaaatgcaactccagcagcaagggagggaagctgagtgag
aacttctcagagctgaagaaaggaactgcagcctccctggcacagatgagttcagagtct
gtgttggatcctcagcaaatccaagcttttgaccagctctgccgattgaaccgaggcact
tcccgactggctctcctgacggagctggcgcgtggtgacaagcatgggctgctcagcgtt
tcccacggggacccggccaccagcagcgtcttccagaacgagaacttccagctgcacctg
acgccccctcctctggctgaagagtag
DBGET
integrated database retrieval system
