Agelaius tricolor (tricolored blackbird): 139594860
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Entry
139594860 CDS
T10815
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04136
Autophagy - other
atrc04140
Autophagy - animal
atrc04145
Phagocytosis
atrc04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
139594860 (ATG16L1)
04140 Autophagy - animal
139594860 (ATG16L1)
04136 Autophagy - other
139594860 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
139594860 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atrc04131
]
139594860 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
atrc03029
]
139594860 (ATG16L1)
Membrane trafficking [BR:
atrc04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
139594860 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
139594860 (ATG16L1)
Mitochondrial biogenesis [BR:
atrc03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
139594860 (ATG16L1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
DSE1_N
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_EIPR1
ANAPC4_WD40
CFAP251_N
Beta-prop_VPS8
eIF2A
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_ACSF4
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
Ge1_WD40
Tricorn_2nd
Beta-prop_WDR41
ZapB
INO80F
HEF_HK
BEGAIN_coil
HTH_6
DUF8181
Peptidase_M15_4
PALB2_WD40
CLIP1
V_ATPase_I
YicC-like_N
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
139594860
NCBI-ProteinID:
XP_071293548
LinkDB
All DBs
Position
Unknown
AA seq
624 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAEELRRRDRLQRQAFEEIIAQYNKLLEKSDLHAVLADKLQAEK
YDIQSRHEISPGHDSTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPRDDD
IEVLADETSDTAEETSPVRAVSRTSSKRLSQPAGGLLDSISNIFGLSESPLLGHQSSDTA
RRRSLSSFPAPQDNAEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRTESIVKELELFGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVK
QTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAV
TWSPSGAHVVSVDKGNKAVLWAEF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgccgccgggttccccccctggaagcggcacatcgcggaggag
ctgcggcggcgggaccggctgcagcgccaggctttcgaggagatcatcgcccagtataac
aagctgctggagaagtcagaccttcatgcagtgctggctgataaacttcaagcagaaaaa
tatgacatacagagcagacatgagatcagcccaggacacgatagcacatggaacgatgct
cagctgcaggaactggcccagctgaagataaagcaccaagaggagctgactgagctgcac
aagaaacgtggagagctggcccagtctgtaattgatttgaacaaccaaatgcagcagaag
gacaaagagatgcagatgaatgaagccaagattgcagagtatttgcaaaagatttctgaa
ctggaaacagagtgccaggaattgcgtagcaaactgcaagatcttgagcgagctaatcag
accctgaaagatgagtatgatgctctccagatcaccttcaatgccttggaggagaaacta
aggaaaactactgaggacaaccaggagctggtctcacgttggatggcagagaaagcacaa
gaagccaatcgtttgaatgcagaaaatgaaaaggattcaaggagacgccaggccaggctg
cagaaggagctggcagaagctgccaaagaacccttgcctgttgaacccagggatgatgac
atcgaagtgcttgcagatgaaacctctgacacagctgaggaaacctctccggtgcgagct
gtcagccggacatccagtaagcgactctcccagccagctggaggccttctggactctatc
agtaatatctttggtctgtctgagtctccccttttgggacatcagtcttctgatactgcc
aggaggcgttctctgtcctcattccctgcaccccaggacaatgcagagccccatccaggt
gccagtaaagaagtgagagtgcccactactgccatttgtgtctttgatgcacatgatggg
gaggtgaatgcggtgcagttcagccctggctcccggttactagcaacaggaggcatggac
cggagggttaagctttgggaagtcttgggagataggtgtgagcccaaaggttccctctct
ggcagtaacgctgggattacaagcatagagtttgatagtgctggttcttacctcttagct
gcttcaaatgactttgccagcagaatctggacagttgatgacaatcgattacggcacacc
cttacaggtcacagtggtaaagttctgtcagccaagttcttgctggacaatgcacgtatt
gtttcgggaagtcatgaccggaccctcaagctctgggacctccgcagcaaagtttgtata
aaaacagtgtttgcaggatctagctgcaatgacatcgtgtgtactgagcagtgtgtaatg
agtggacattttgataagaaaattcgtttctgggacatcaggactgaaagcatagtaaaa
gaactggagctgtttggaagaatcacagctctggacctgaacccggagcgaacagagctt
ctgacctgttcccgtgatgatctgctcaagatcattgatctgcgggtcagtgctgtcaaa
cagaccttcagtgcccagggattcaaatgtggctctgactggacaagagttgtgttcagc
cctgatggtaactatgtggctgctggctcagctgatggggccctctacatttggaatgtg
cttactgggaaattggagaggacgcttgcaaagcatcacagttcttctatcaatgcagtc
acgtggtcaccatcgggtgcccacgtggtcagtgtggacaaaggaaacaaggctgtgctg
tgggctgagttctga
DBGET
integrated database retrieval system
