Agelaius tricolor (tricolored blackbird): 139594900
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Entry
139594900 CDS
T10815
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04382
Cornified envelope formation
atrc04510
Focal adhesion
atrc04512
ECM-receptor interaction
atrc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139594900 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139594900 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
139594900 (COL4A3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139594900 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atrc04147
]
139594900 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
atrc00536
]
139594900 (COL4A3)
Exosome [BR:
atrc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139594900 (COL4A3)
Glycosaminoglycan binding proteins [BR:
atrc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139594900 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139594900
NCBI-ProteinID:
XP_071293631
LinkDB
All DBs
Position
Unknown
AA seq
1746 aa
AA seq
DB search
MPAEDGRTDGQAAAASAAQGTRGEMRGWTRGVAGAGPRPGSAEAGAEEPSGQNHGRAGGG
QSGSAPGRRAGSAEGGMAGGGCPGRLAPVLLLALLWPGRAAAENCVCKGKSPCFCDSTKG
SKGEKGFPGVPGPPGQRGFPGPEGPPGPQGPKGSPGLTGLAGPKGIRGVPGIPGFSGPPG
LPGEPGAVGPPGPPGVPGCNGTKGDQGFPGPPGRRGAPGLPGVAGIKGEKGYPAEGYSQE
YGAKGDPGLPGMPGLQGAQGAQGYPGELGPQGPPGPLGMPGKPGPPGPKGLMGLKVIGAK
GRKGDTGLTGPPGPPGTVIVTLTGPDNMTDLKGEKGEKGSRGLPGPMGFTGPVGDSQSEK
GDRGEPGAQGKPGKEGPPGPPGLPGQKGEQGKPGLAGRQGAKGMKGNPGPPGACGQTEYY
DYVVGEKGDEGPPGPPGPKGQRGMPGPQGPPGAAGRPGVSRPGMRGPPGFPGPKGTKGER
GQTGLCIVGPPGLPGITGRPGSVGLPGPPGEPGRVTFGTGLPGLPGEPGCTGPPGPPGDT
GMRGDDARVCTDCSYIPGMPGLPGSPGPRGQDGMPGREGTTGPKGSPGSPGTPGLPGAQG
PPGFRGDQGRKGSKGEPRYVHPEGPKGEQGDPGARGEKGRRGSSGFLGRPGSKGSKGSKG
EEGLAGAKGDRGLPGLPGGIGLPGEMGLPGLAGYGPQGVRGFKGSKGIPGPPGLPGEAGL
KGETSRAAPLPALPGPQGPHGLPGPPGVPGRVGARGQPGDPGHSGPTGDTGFPGLGFPGN
PGAKGDKGLAGGRGPPGCEGKIGDPGRAGNLGQPGQKGEPGMIIPGEPGRMGSPGALGSP
GSKGEVGLPGLPGLPGHPGHDGDDGLRGDRGSPGAPGDPGFPGKPAECLIGLPGLPGGQG
ATGPPGGRGLQGSKGNLGAPGLSIPGTYGKPGEPGLIGLQGKTGLPGPKGQSGRPGISGL
PGARGDPGVMGLLGIPGPPGMVGRPGNPGIQGSPGSPGIKGRKGFLGEKGEPGDKGFPGP
SETLVGIGDKGERGFKGVQGQMGVRGEKGDVGVQGPPGVDGSEGMPGLPGAKGFMGLPGI
PGGQGFPGALGDKGDMGIPGPKGQKGSPGFPGPSGDPGPPGYGGFPGDKGDPGYPSAGPP
GEPGPKGDPGPPGVFGSKGEKGSQGHPGLTGVPGPHGIRGETGGAGVPGQYGPPGDPGVK
GCQGRQGQQGVPGPPGAVGVPGKPGLVGERGSQGQDGMPGPPGVKGEPGPPGRGIPGFPG
IPGRRGIKGDMGLPGFPGPPGVKGHQGDQGPIGPPGLVGLPGFQGTTGVAIIGQKGNRGT
PGAHGRPGAPGFPGLPGLSTLSVKGSKGVRGADGIPGPRGPAGDIGPPGPKGIEGRSGYP
GARGDPGFLGFPGVKGEKGNQGPPGPQGAEGPRGPKGQQGPPGFPGKIFSIPGSKGPAGL
PGVPGTPGDQGIQGIPGLQGPKGVKGLPGRFGHPGRPGLPGPKGDRGFPGQRGQPGLIGF
PGLQGLPGSPGTIAAGPTRKGFIFTRHSQTTKIPSCPHGTSQIYVGYSLLFVQGNERAHG
QDLGTAGSCLQRFSTMPFLFCSPNDVCSFASRNDYSYWLSTAVVMPPDMAPISGRALEPQ
ISRCVVCEGAAMVIAVHSQTTVVPACPDGWMSLWKGFSFVMYTSAGSEASGQALASPGSC
LEEFRAVPFIECHGRGTCNYYTNSYSFWLASLNPRRMFRRPVPQTLKAGQLENIISRCQV
CMKRPI
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctgaggacggacggacggacgggcaggcggcggctgccagcgctgcccaaggc
acgcggggggagatgagggggtggacgagaggggtggccggggcggggccgcgacccggg
agcgccgaggcgggtgcggaggaaccctcaggccaaaaccacgggagggcaggagggggg
cagagtggaagcgccccgggacgccgcgcaggcagcgccgagggggggatggccggcggg
ggctgccccggccgcctggcgccggtgctgctgctcgccctgctctggccgggccgcgcc
gcggcggagaactgtgtatgcaaaggtaaaagtccctgcttttgtgatagcacaaaaggt
agtaagggtgaaaaaggctttcctggtgttccaggtccacctggtcaaagaggctttcct
ggtccagaagggcctccagggccacagggaccaaagggttctccagggcttacaggctta
gctggaccgaaaggtatccgaggagtcccaggaatacctggattttcaggtcctccaggc
cttcccggtgaaccaggagctgttggtcctcctgggcccccaggtgttccaggatgcaat
ggcacaaagggtgaccaaggatttccaggtcctccaggtcgaagaggtgctccaggcctt
ccaggagttgctggtatcaaaggagagaaggggtaccctgcagagggatatagccaagag
tatggtgcaaaaggtgatcctggattaccaggaatgcctggtctccagggtgcccagggt
gctcaaggatatcctggggaacttggaccacagggccctccaggacctttaggcatgcca
ggaaaaccaggacctcctggacctaagggtcttatgggactgaaagtaataggagccaaa
ggaaggaagggtgacactgggttaactggaccccctgggcccccaggaactgttattgtg
acgttaactggaccagacaacatgacggacttgaaaggagaaaaaggagaaaaaggatca
agaggactcccagggccaatggggtttacagggccagttggtgattcccaaagcgaaaag
ggtgaccgaggagaaccaggagcacaggggaagcctggaaaagaaggtcccccaggtcca
cctggcttaccgggacaaaagggtgaacagggcaagccaggactggctggaaggcaagga
gccaaggggatgaaaggaaaccctggtccacctggagcttgtggtcaaacggagtattat
gattatgtggttggtgaaaaaggggatgagggaccccctggacctccaggaccaaaaggt
caacgtggcatgcctgggccacagggtcctcctggagctgctggaagaccaggtgtgtca
agacctggtatgagaggtcccccaggatttcctgggccaaaaggaacaaaaggagagaga
ggacaaactggcttgtgtatagtaggccctccaggactgcctggtattactggcaggcct
ggttctgttggattgccaggtcctccaggagaaccaggtagagtaacatttggaactggc
ctgccaggacttcctggagagccagggtgtacaggacctccaggacctccaggagatact
ggcatgagaggtgatgatgctcgtgtgtgtactgattgtagctacattccgggaatgcct
ggtcttcctggttctcctgggcctcgtggtcaggatggcatgcctggtagagaaggaaca
acaggtccaaaaggttctccaggttctccaggaacaccagggcttccaggggctcaagga
cctccaggttttagaggagatcaaggtcgtaaaggatcaaaaggtgaaccaagatatgta
catccagaagggccaaaaggtgagcaaggagatccaggagccaggggagaaaaaggaaga
agaggttcaagtggatttctgggaagacctggctctaaaggatccaaaggttctaaaggt
gaagagggattggctggagcaaaaggagatagaggactacctggattgcctggtggaatt
gggcttcctggagaaatggggcttcctggactggcaggttatggaccacaaggagtaaga
ggttttaaaggctctaaaggaatacctggaccacctggattacctggagaagcaggtctg
aaaggagagaccagtagggcagctccattacctgcactgccaggacctcaaggaccacat
ggtttacccggacccccaggagtgcctggtagggttggagcaagaggtcagccaggtgat
ccaggacattcaggaccaacaggtgacacaggctttccagggcttgggtttcctgggaac
ccaggtgcaaaaggagataaaggacttgcaggaggcagagggccaccaggttgtgaagga
aagattggagatccaggccgagctggaaacctaggacaaccaggacaaaagggtgagcca
ggcatgattattcctggagagccaggaagaatgggttcaccaggagctctcggcagtcct
ggctcaaaaggtgaagttggacttccaggactcccaggcctaccagggcatcctgggcat
gatggtgatgatggcctaagaggagatcgtggctcacctggagctcctggagacccgggt
tttccagggaaacctgctgaatgtcttattggcctgccaggtttgccaggtggccaggga
gctacaggcccaccaggaggaagaggtttacaaggttcaaaaggaaacctaggtgctcct
ggtttgagtatcccaggaacctatggaaagcctggggaacctggattaataggtcttcaa
ggaaaaacaggattacctggtcccaagggacaatctggaaggccgggaatctctggtttg
ccaggtgcaaggggagatccaggtgtaatgggactgttaggaattcctggaccccctggc
atggttggaagaccaggcaaccctggtatccaaggttctcctggctccccaggaataaag
ggaagaaaaggatttcttggagaaaaaggtgaaccaggtgataaaggttttcctggacca
tctgagaccttggttggtattggggacaaaggagaacgaggttttaaaggagttcaaggc
caaatgggtgtgaggggagaaaaaggagacgttggtgtgcaaggtccaccaggtgttgat
gggtctgaaggaatgcctggtctaccaggagccaagggatttatgggtcttccagggatt
cctggaggacaaggattccctggtgcacttggagacaaaggggacatgggaattccaggt
ccaaaaggccagaaaggatctccaggctttccaggaccatcaggtgaccctggtccacca
ggctacggtggctttccaggtgacaaaggagatcctgggtacccatctgctgggcctcca
ggagaacctggtccaaagggagatccaggtcccccgggagtttttggcagcaaaggagaa
aagggctcccagggccatccggggcttactggagtaccaggaccacatgggatcagaggg
gaaactggaggtgcaggagtcccagggcagtatggaccccctggagatcctggtgttaaa
ggatgccagggccgccaaggacagcagggagtcccaggccctcctggtgccgttggagtc
cctggaaaacctggacttgttggtgaaaggggttctcaaggtcaggatggtatgcctggt
cccccaggagtaaagggagaaccaggaccaccagggagagggatccctggttttccaggt
attcctgggcgtagaggaatcaaaggggacatgggactgcctggttttcctgggcctcca
ggtgtgaaaggtcatcagggagatcaaggacccattggacctcctggcttagtggggtta
cctggatttcagggcaccacaggcgtggcaatcattggccagaaagggaacagaggtact
cctggtgcacatggaagaccaggtgctcctggttttccaggccttcctggcctttccact
ctgagcgtgaaaggaagcaaaggtgtccgaggggcggatggaattccagggccaaggggc
ccagctggtgacattggccctcctggtcccaaaggaatagaaggtcgatcgggctatcct
ggtgctagaggggaccctggatttcttggattcccaggtgtaaaaggagaaaagggtaat
caaggacccccaggaccacaaggtgcagaagggccaaggggaccaaagggccagcaaggc
ccacctggattccctggaaaaatattctctatcccaggaagcaagggtcctgcaggactg
ccaggagtcccaggaacaccaggtgatcaaggaattcaagggattcctggactacaaggg
cccaaaggagtaaaaggtctaccaggacgttttggtcacccaggacgtccaggattgcct
ggtccaaaaggagacaggggatttccaggccaaagaggacaacctggattgattggcttt
ccaggtctgcaggggttacctggatcaccaggtactatcgctgctggtccaacaagaaaa
ggatttatttttacccggcacagtcagacaacaaagattccttcctgcccacatgggaca
tcccagatctatgttggctattctctgctttttgtacaaggaaatgaacgagcacatgga
caagatcttggaacagctggtagctgcttgcagaggttcagcaccatgccattcttgttc
tgcagccccaatgatgtttgtagctttgcttctcgcaatgactactcctactggctgtcc
actgcagtggtgatgccaccagacatggcacccatttctggcagggcactagagccccag
ataagcaggtgtgttgtctgtgaaggagctgcaatggtaatagcagttcatagccaaaca
actgtggttcctgcatgtccagatggctggatgtctctctggaagggtttttcttttgtt
atgtacacaagtgctggctcagaagcttctggccaagctttggcatctcctggatcttgt
ctggaagaatttcgggccgtcccattcatagagtgccatggcagagggacatgcaactac
tacacaaattcctacagtttctggttggcatccttaaatccaagaagaatgttcaggaga
cctgtgccacagactttgaaagcaggacaactagagaatatcatcagtcgttgtcaggtc
tgcatgaagagaccaatctaa
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integrated database retrieval system
