KEGG   Agelaius tricolor (tricolored blackbird): 139595065
Entry
139595065         CDS       T10815                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
atrc  Agelaius tricolor (tricolored blackbird)
Pathway
atrc03030  DNA replication
atrc03410  Base excision repair
atrc03420  Nucleotide excision repair
atrc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:atrc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    139595065 (RFC4)
   03410 Base excision repair
    139595065 (RFC4)
   03420 Nucleotide excision repair
    139595065 (RFC4)
   03430 Mismatch repair
    139595065 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atrc03032]
    139595065 (RFC4)
   03036 Chromosome and associated proteins [BR:atrc03036]
    139595065 (RFC4)
   03400 DNA repair and recombination proteins [BR:atrc03400]
    139595065 (RFC4)
DNA replication proteins [BR:atrc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    139595065 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    139595065 (RFC4)
Chromosome and associated proteins [BR:atrc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    139595065 (RFC4)
DNA repair and recombination proteins [BR:atrc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     139595065 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    139595065 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_16 AAA_30 AAA_11 AAA_22 AAA_24 Mg_chelatase DUF815 SLFN-g3_helicase AAA_14 RuvB_N AAA_19 AAA_5 TIP49_C AAA_28 DNAX_ATPase_lid ResIII AAA_7
Other DBs
NCBI-GeneID: 139595065
NCBI-ProteinID: XP_071294059
LinkDB
Position
Unknown
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKNAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELILGCQSGSFEKLETLAKNLINEGFA
VAQLVNQLHDTIVESGDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NI
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggtccggcctctatcagcaccaagcccgtcgctgccaaggaa
aagaatgcggccgggagcagcggggagggcaagaggaccaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtggatgaagtcgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctagagaactgtttgggcctgatttattccgg
cagagagtccttgagctgaatgcctctgatgagcgtgggatacaagtgatccgggagaag
gtgaaggcttttgctcagctaacggcctctgggagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtgatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgtcttatttgtaactac
atcagcagaataattgaacctttaacgtctcgatgctccaaattccgcttcaagcctttg
tctgacagtatccaacagcagaggctgttggatgtttctgagaaggaacatgtgaaaatc
agtaatgaggcagtgtcatacctggttaaagtgtcagaaggggacttaagaaaagcaatt
acttttcttcaaagtgccactcgcctaatgggtgggaaggagatcacagagaagataatc
actgaaattgctggggtaatccctaaagaaacaattgatgagctgatcttgggctgccag
agtggttcctttgagaaactggaaacactggcaaagaatctcatcaacgaggggtttgct
gttgctcagcttgtaaaccagctgcatgacaccattgtggagagtggagattacagtgac
aagcagaaatctgccatagttgagaaacttgcagaagtggacaaatgcctggcagacggt
gctgatgaattcttgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacatctga

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