Agelaius tricolor (tricolored blackbird): 139595598
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Entry
139595598 CDS
T10815
Symbol
ERCC6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
139595598 (ERCC6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
atrc03036
]
139595598 (ERCC6)
03400 DNA repair and recombination proteins [BR:
atrc03400
]
139595598 (ERCC6)
Chromosome and associated proteins [BR:
atrc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
139595598 (ERCC6)
DNA repair and recombination proteins [BR:
atrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
139595598 (ERCC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
DEAD
TFIIF_beta
C6
Motif
Other DBs
NCBI-GeneID:
139595598
NCBI-ProteinID:
XP_071295171
LinkDB
All DBs
Position
Unknown
AA seq
1501 aa
AA seq
DB search
MIMSFFFVAFEQRMPTHKSHPPDSIQEPESATTSSNDCLHIDEDLGAEQENGICDNGVGN
GTGVPNSDCQASTSMAVPLEVPRRGHPLLQINRQQIQSVSCSAHAAELKDLGVDVYDQDV
LEQGVLQQVDNAINEATKAAKIANASKEYESVLEDLRSCSTSLRHINKIIEELSPQAADN
KNINRKLDSVKRQKYNKEQQLKKIKAKQKRLQGILGLTDFADEANEVEYEEDEEPGPSSL
GSMLMPAQETEWAELIRTGQMTPFGTKIPQKPERKARQLRLNETSDFEKYLADQAKLSSE
RKKLSRHKGAKKKAQAKNVQCVAPAAATKEKSGKALSKTDKRLKKHLRELQKHALQIHSK
ARIPKEQKYPEAKKCRHEQEDDSGESEYVPDEELFDPEAAEEEEEQASSLAESDSDYELK
SLSRKRKHLVRKGSKEAENDADCVPSSEEEERTPGKHKVRRWRDDGDVEYYKQRLRKWQK
ERLKDKEHQTAEELSEESDVEFEEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILG
DEMGLGKTIQIIAFLAGLSYSNMRTRGSNYRYQGLGPTVIVCPATVLHQWVKEFHTWWPP
FRVAVLHETGSYTKSKVKLIHEIASCHGILITSYSYIRLMQDNIHTYDWHYVILDEGHKI
RNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFIFPGKLGTLPVFMEQFSVPI
TMGGYCNASPVQVKTAYKCACVLRDTINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTEE
QRQIYQNYINSKEVYQILNGDMQILLGLSTLRKICNHPDFVADSPRLLKSVPDAEAEDPN
QFGYWKRSGKMIVVESLLKIWHKQGHRVLFFTQSRQMMQILEVFVRYRNYSYLRMDGTTA
VASRQPLVTKYNEDKSIFLFLLTTRVGGIGVNLVGADRVIIYDPDWNPSVDTQARERAWR
IGQKKEVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQNRFFKSNDLYELFTLNSP
DVSQGTETSAIFAGTGSDVQVPKPPANGTSKRDVHLAESSSHKKKSSNSYSTTHMKDSSS
KAVETSEETRGTLEAFDQNSYTKDNAQAAADTNSFNESKEECLESDEKCMSQSVPCSAGS
AENAEGLAAVVAGEGRGADNADARTDLSLTCDAAGSWEKQDAKTEDGQIDNNHFKCISKT
KHKVDVLSHESHRDKSKKKHHKDAKFEGKRIPHLVKQKQYRRENSEEQDSKKNDDYVLQK
LFKKSGVHSVMKHDAIMDASNADHVLEEAEASRVAQDALRALRLSRQQCLGAASGVPTWT
GTSGLSGAPSGIKSRFGQKRNSMLLSSHSTCASPAKKQKDGDTIKKQNIRKCSSSEHFNG
KSGESSSSALDSSSLLARMRARNHLVLPQQTRDEGNENHQPAPAPVPGSTEYDELLVDLR
NFLAFQARVDGEASTRELLQEFESKLPAEHSCVFRELLRNICTFHRSPNGEGVWRLKPEF
R
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgataatgtccttcttctttgttgcctttgagcagaggatgccaacacacaagagtcac
cccccagacagtatccaagaaccagagtctgccactacttcaagcaatgattgcctgcat
attgatgaggacttgggagctgaacaggaaaatggcatttgtgacaatggtgtgggtaac
ggtactggagttcccaactctgactgccaggcttccacttccatggctgttcctttggag
gtgcccagaagaggacatccccttttacagatcaacaggcagcagattcagtctgtctca
tgtagtgcacatgctgctgagctcaaagatttaggagttgatgtctacgaccaggatgtg
ttggagcaaggagttcttcagcaagtagataatgcaattaatgaagcgactaaagcagca
aaaatagctaatgcatcaaaagagtatgagtcagtactggaggatttgagatcatgttca
acatctctgagacatataaataaaattattgaggaactttcacctcaagctgctgacaac
aaaaatattaacagaaaactagattctgtgaaacgacaaaaatataacaaggagcaacag
ctgaagaagataaaagcaaaacaaaaacgtcttcaaggaatacttggtttaacagacttt
gctgatgaagcaaatgaggttgaatatgaggaagatgaagaacctggtccatcatccctt
ggcagtatgcttatgcctgctcaggaaacagagtgggcagagctcatccgaactggtcag
atgactccatttggaactaaaatacctcagaagccagagaggaaggcacgacagttaagg
ctaaatgaaacatctgattttgagaagtacttagcagaccaggctaaattgtcatctgaa
agaaagaagttatcccgtcacaaaggagcaaagaagaaagcacaagccaaaaatgttcag
tgtgtggctcctgcagctgccacaaaggagaaaagtggtaaagccctctcaaaaacagat
aagcgtttaaaaaaacacttgagagagcttcagaagcacgcccttcagattcattccaag
gccaggattccaaaggagcagaaatacccagaggccaagaagtgcaggcatgaacaagag
gatgatagtggggagtctgagtatgtacctgatgaggaactctttgatccagaagcagca
gaagaggaagaagagcaggcatcttctcttgctgagagtgattctgattatgaacttaag
agtttatcaagaaaaagaaaacatttggtgaggaagggttctaaagaagctgaaaatgat
gctgactgtgttccaagctctgaggaagaggagcgtacaccagggaagcacaaagtgaga
cgatggagagatgatggagacgtggagtattataaacagagactaaggaagtggcaaaaa
gaacgtttgaaggataaagaacatcaaactgctgaggaactttctgaagaaagtgatgtt
gagtttgaagagggtttcaaagtaccaggatttctcttcaaaaagctttttaagtaccag
cagacaggtgttaggtggctttgggaattgcactgccagcaggcaggaggaattctggga
gatgagatgggattgggcaagaccattcagataattgccttcttggcaggtctgagctac
agcaatatgaggactcgtggttcaaattacaggtaccagggattgggtccaacagtgatt
gtctgtccagctactgtgttgcatcagtgggtaaaagaattccacacttggtggcctcca
tttagagttgctgtgctccatgaaactggttcttatacaaagagtaaggtgaaattaatt
catgaaattgcttcatgccatgggattttaattacatcttactcgtacattcgtctgatg
caagacaacatccacacgtatgattggcactatgtcattctggatgagggtcacaaaatc
cgaaatccaaatgctgcagtcacacttgcatgcaagcagttccgcacaccccatcgaatc
atcttgtctggctcccctatgcaaaataacctaaaggagctctggtccctctttgacttt
atattcccaggaaaattgggaaccctccctgtgttcatggagcagttttctgtcccaata
accatgggaggatattgcaatgcctctcctgtccaggtaaaaactgcatacaaatgtgca
tgtgtgttacgggacaccataaacccctacctactgcgaagaatgaaggctgatgtaaaa
atgagcctttcacttccagataaaaatgaacaggtcctgttttgccgtttgacagaggag
cagcgccaaatctatcaaaattacatcaactctaaagaagtttaccagattctcaatgga
gacatgcagattctattaggactatcaactttgagaaagatttgcaatcaccctgacttt
gttgctgatagtcccagacttctgaagagtgtgccagatgcggaagcagaggatccaaat
caatttggatattggaaacgttctggaaaaatgatagtggtagaatccttgctgaaaata
tggcacaagcaaggtcacagagtgctgttctttactcagtcaagacagatgatgcaaata
cttgaagtctttgtgagatacagaaactattcctacctcaggatggatggcaccacagca
gtagcttccagacagcctcttgtaacaaaatacaatgaggataaatccatatttcttttt
cttctaacaactcgtgttggtggcattggagttaacttggttggtgctgaccgggttatt
atttatgatcctgactggaatcccagtgtagacacacaggctcgggaacgtgcttggagg
ataggccagaagaaagaggtgactgtgtataggctgctcactgcagggactattgaggag
aagatataccacagacaaatcttcaaacagtttttaacaaacagagtgctgaaagaccct
aagcagaatcgcttcttcaaatccaatgacctgtatgaactatttactctgaacagccca
gatgtgtctcaggggacagaaacaagtgcaatttttgcaggtactggttcagatgttcaa
gtcccaaagccacctgctaatggcacttctaaacgtgacgtccatcttgcagaaagcagc
tcacacaagaagaagtcctccaattcctattccaccacacacatgaaagattcttcttct
aaagcagtagagacaagcgaggaaaccaggggaaccttggaagcctttgaccaaaatagc
tacacaaaagataatgcacaagctgctgctgatacaaattcattcaatgaaagcaaggaa
gaatgcttagaaagtgatgagaaatgcatgtcccagtcagtgccatgcagtgcagggtct
gcagagaatgcagaaggtctggctgccgtggtggctggtgagggacgtggagcagataat
gcagatgccaggacagatctcagcctcacttgtgatgcagctggctcttgggaaaagcag
gatgctaaaactgaagatgggcaaattgataataatcattttaagtgtatctcaaaaaca
aagcacaaggtggatgtgctgtcacatgagagccacagagacaagtcgaagaagaaacat
cacaaagacgccaaattcgaaggaaagcgcattcctcatcttgtgaaacaaaagcaatac
agaagggagaacagtgaagagcaagactcaaagaaaaatgatgactatgtcttgcagaaa
cttttcaaaaaatcaggggtacacagtgttatgaagcatgatgccattatggatgcctcc
aatgcagatcatgtgctggaggaagcagaagcgagcagagtggcccaggacgctttgaga
gccctgagactgtctcgtcagcagtgtttaggagctgcttctggtgtgccaacctggaca
ggcacgagtggtctttcaggtgcaccatcaggaataaagagtcggtttggccaaaaaaga
aactccatgctgctttcttcacattccacttgtgcatcacctgcaaagaagcagaaggat
ggagatacaataaagaaacaaaatataaggaagtgtagttccagtgagcacttcaatgga
aaatctggagaatcatcatccagtgctctggactcttcatctttattagctcgcatgagg
gcaaggaaccaccttgttttaccacagcagacaagggatgagggcaatgagaatcatcag
ccagcacccgccccggtcccgggttccacagaatacgatgagctgctcgtggatctgcgc
aacttcctggcgttccaggcccgcgtggatggcgaggccagcactcgggagctgctgcag
gagtttgagtccaaactgcctgcagagcactcctgtgtcttcagagagctgctccgcaat
atctgcaccttccataggagcccaaatggggaaggggtctggaggctgaagccagaattc
cggtga
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integrated database retrieval system
