Agelaius tricolor (tricolored blackbird): 139596330
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Entry
139596330 CDS
T10815
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139596330 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atrc03021
]
139596330 (SF3B3)
03041 Spliceosome [BR:
atrc03041
]
139596330 (SF3B3)
03036 Chromosome and associated proteins [BR:
atrc03036
]
139596330 (SF3B3)
Transcription machinery [BR:
atrc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
139596330 (SF3B3)
Spliceosome [BR:
atrc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139596330 (SF3B3)
Complex B
139596330 (SF3B3)
Complex C
U2 SnRNP specific factors
139596330 (SF3B3)
Chromosome and associated proteins [BR:
atrc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
139596330 (SF3B3)
TFTC complex
139596330 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
139596330
NCBI-ProteinID:
XP_071296619
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DEWYVLVGVAKDLILNPRSVAGGFVYTYKLVNSGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacctgacgttgcagcgtgccacaggcattagctttgctatccatggc
aatttctcaggaaccaaacaacaagaaattgttgtttcccggggcaagatcctggagtta
ctgcgccctgatcccaacacagggaaggttcacacgctgctgaccgtggaggtgtttggg
gtcatccgctccctcatggccttcaggctgacagggggcaccaaggactacatcgtggtg
ggcagcgactcggggcgcatcgtcatcctggagtaccagccctccaagaacgtcttcgag
aagatccaccaggaaacctttggcaagagtggctgtcgcaggatcgttccaggccagtac
ctggctgtggacccaaagggccgcgctgtcatgatcagtgccattgagaagcagaagctg
gtgtatatcctgaacagagatgctgctgctcgactcaccatctcctccccactggaagcc
cacaaggctaataccttggtctaccatgtggtgggagtcgacgtggggtttgaaaaccca
atgtttgcttgtctggaaatggattatgaggaagcagacaacgatccaacaggtgaagct
gcagccaacacacagcagacattgacattttatgaactggacttgggtttgaaccatgtt
gtcaggaaatacagtgagcccctggaagagcatggcaacttcctcataacagttcctggt
ggttctgatggccccagcggggtgctgatctgttctgagaactatattacttacaaaaac
tttggtgaccagcctgatatcagatgcccaattcccaggagacggaatgacttggatgat
ccagagaggggtatgatctttgtctgctctgctacacataagaccaagtccatgttcttc
ttcctggcccagacagagcagggagacatcttcaaaattactttggagactgatgaagac
atggtaacagagattcgactgaagtactttgacactgttcctgttgctgctgccatgtgt
gtgctgaaaacaggatttctctttgtggcatctgaatttggaaaccattacctgtaccag
atagctcacctgggggatgatgatgaggagccagagttttcctctgccatgcctcttgag
gaaggagacacattctttttccagcctcgacctctgaagaacctggtgctggtggatgag
ttggacagtttgtctcctattctgtgttgtcagatagcagatttggccaatgaagacaca
ccccagttgtatgtggcttgtggtcgggggcccaggtcatccctgagggttttaagacat
gggcttgaggtatctgaaatggctgtgtcagagctgcctggtaaccccaatgctgtatgg
actgtgaggagacatgttgaagatgaatttgatgcctacattatcgtgtccttcgtaaat
gccacactggtgctgtccatcggagagactgtagaggaagtgactgactctggattcctg
ggcactacaccaaccttgtcctgctctcttcttggtgatgatgctttggtacaggtttat
ccagatgggatccggcatatccgagcagataagagagtaaatgaatggaagacaccagga
aagaaaaccattgtaaaatgtgctgtgaaccaaagacaagtagtgatagcactgactgga
ggagaactggtttactttgagatggacccgtcaggacagctgaatgagtacacagagaga
aaggagatgtcggctgacgtcgtttgcatgagcctggccaacgttccccctggggagcag
cgttcccggttccttgctgttggactggtggacaacactgtcagaattatttcacttgac
ccttcagattgcttacagcccctgagtatgcaggcactgcctgcacagcccgagtcgctg
tgcatcgtggagatgggtggcacagagaagcaggatgagctgggagagaggggctccatt
ggctttctgtacctgaacattggactgcagaacggtgtgctgctgcggaccgtcctggac
cccgtcactggcgacctgtccgacaccaggacccgatacctcggctcccggcccgtcaaa
ctcttccgtgtccgaatgcaaggccaggaggcggtgctggccatgtcaagccgttcctgg
cttagttattcctatcaatcacgcttccacctgactcccctgtcttatgagacactggag
tttgcatctggttttgcttctgagcagtgccctgagggcattgtggccatctccacaaac
acattgaggattttggcactggagaagctgggagcagtcttcaaccaggttgccttccca
ttgcagtacacaccccgaaaatttgtcattcacccagagagcaacaacctgatcatcatt
gagacagaccacaacgcttacactgaggccaccaaggcacagaggaagcagcaaatggct
gaggaaatggtggaggctgcaggtgaggatgagagggagctggctgcagaaatggctgca
gcctttctgaacgagaatcttcctgagtccatctttggtgctcccaaggcagggaatggt
cagtgggcctctgttatcagagttatgaaccccatccagggaaatacattagatctggtt
cagctggagcagaatgaagctgctttcagcgtggctgtgtgccgcttctccaacaccggt
gatgagtggtacgtgctggtgggagtcgccaaggacctgattctgaacccacgctccgtt
gctggggggtttgtctacacatacaagctggtcaacagtggtgagaagctggagtttctg
cacaagaccccagtggaggaggttcctgcagccattgctccattccaaggccgagtgtta
attggagttgggaagctcctgcgtgtgtatgacctgggcaagaagaaactgcttcggaaa
tgtgagaacaagcacattgccaactacatctgtgggatccaaaccattgggcacagagtg
attgtttcagatgttcaggagagtttcatctgggtgcgttacaaaaggaatgagaaccag
ctcattatctttgctgatgacacttacccccggtgggtcactacagcaacgctcctggat
tacgacaccgtggctggggcagacaagtttggtaacatctgtgtggtgagattgcctccc
aacaccaatgatgaggtagatgaggatcccacaggcaacaaagctctctgggacaggggc
ctgcttaatggagcatcgcagaaggctgaagtgattatgaattatcatgtgggagaaacg
gtgctttccttgcagaagaccacactgattccaggaggctctgaatctcttgtttataca
accttatcagggggaataggaatcttggtcccttttacttcccatgaggatcacgacttc
ttccagcacgtggaaatgcacttacggtctgagcaccctcctctctgtggacgggaccat
ctcagtttccgctcctactacttcccggtgaagaacgtgattgatggggacctgtgtgag
cagttcaactccatggagcctaacaaacagaagaatgtggccgaggagctggaccggacc
ccacccgaggtgtccaagaagctggaggacatccgcacacgctacgcgttctga
DBGET
integrated database retrieval system
