Agelaius tricolor (tricolored blackbird): 139596346
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Entry
139596346 CDS
T10815
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atrc03041
]
139596346 (DDX1)
03016 Transfer RNA biogenesis [BR:
atrc03016
]
139596346 (DDX1)
Enzymes [BR:
atrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139596346 (DDX1)
Spliceosome [BR:
atrc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139596346 (DDX1)
Transfer RNA biogenesis [BR:
atrc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139596346 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
139596346
NCBI-ProteinID:
XP_071296674
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDTEKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYVGLCKAPEGSVVKSQHSGNAQVVQAQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKIN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcggaaatgggtgttatgcctgagatagctcaagcagtggaggagatg
gactggcttctccctacagatatccaagcagaatccatcccgttgatcttaggaggtggt
gatgtgcttatggctgctgaaactgggagtggaaaaactggtgctttcagcattccagtt
atccagattgtttatgaaacactgaaagaccaaatggaaggcaagaaaggaaaagccact
attaaaactggaggggcagtgctcaataaatggcaaatgaacccctatgacagaggatca
gcttttgcaattggatcagatggtttgtgttgccaaagcagagagataaaagaatggcat
ggatgcagagcaactagaggagtgactaaagggaaatactactatgaagtttcctgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttcactagatctgggcact
gataaatttggctttggatttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggaattcactatgcatgatacaattggctgttatctagacacagaaaaa
ggacaaataaaattttccaaaaatgggaaggaccttggccttgcatttgaaatccctcca
catataaggaaccaagcactttttgcagcttgtgtactgaagaatgcggaattgaaattc
aattttggtgaagaagatttcaagtttccaccaaaagatggctatgttggcctttgcaag
gctcctgagggtagtgttgtaaaatcacaacactcaggaaatgcccaagtggttcaagca
cagaaccttccaaatgctccaaaagcattgattgtagaaccatcaagagagctggcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgttgataatcccaaattaagggaa
ctgcttattattggtggagtggctgcaagagatcaactctctgtactggaacaaggtgtg
gatattgttgttggaactcctggaaggctggatgacctggtctcaacagggaagattaat
ttatctcaagttagattcctggttctggatgaagctgatggccttctcctccaaggttat
tcagattttataaacaggatccatagtcaaattcctcagataacctcagatggaaagaga
cttcaggtgattgtgtgctctgcaaccctgcattcttttgatgtgaaaaaactatccgaa
aaaatcatgcattttcctacctgggtagatttgaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcctgtaaatccaaaaactgataaactctgggaaaggcttggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacacggcctggcgctaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacactgttcgagca
attaaagagcacaagatggatcaagccattattttctgcaggactaaaatagactgtgat
aatatggagcaatacttcatccagcagggtggaggccctgataggaagggacatcagttc
tcctgtgtctgtctgcatggtgatagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcctgatctgcacagatgttgctgctagaggaattgat
attcatggtgtaccatatgttatcaatgtgaccctccctgatgaaaaacagaactatgtt
catcgaatcgggagagtcggcagagctgagaggatgggtttggcaatctccctcgtggca
aaagaaaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaagggtgttataac
accaggctgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttaaactgcactattgcccaagttgaaccagacataaaagtacca
gtggatgattttgatgggaaagttacatatgggcagaagagagctctgggaggtggactg
tataaaggccatgtggatatcctggcacctaccgtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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