Agelaius tricolor (tricolored blackbird): 139597285
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Entry
139597285 CDS
T10815
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03013
Nucleocytoplasmic transport
atrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139597285 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
139597285 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139597285 (THOC2)
03041 Spliceosome [BR:
atrc03041
]
139597285 (THOC2)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
139597285 (THOC2)
Spliceosome [BR:
atrc03041
]
Complex C
Other components
EJC/TREX
139597285 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139597285 (THOC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
139597285
NCBI-ProteinID:
XP_071298512
LinkDB
All DBs
Position
Unknown
AA seq
1621 aa
AA seq
DB search
MAALLPAEWIKNWEKGGKSEFVQLCRALSENKNHDVGFRDIQQALYELAYHVVRGNLKHD
QASNVLGDVIEFREDMPSILADVFCILDIETSCLEEKNKRDHFTQLVLACLYLVSDTVLK
ERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLS
GNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQTL
CHILGFKFKFYQDPSGETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREIV
EAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWHHAQSI
MDQMPPFYSTSHKPIAIALCQLVHVTIEPLYRRVGVPKGAKGSPISSLPNKRAPKQAESF
EELRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEFQSDGSKQEDKEKMETLFSCLL
SITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNETYNSHPLLVKVKAQ
TIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYL
TSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLLQYV
ANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKK
SSQRLKDALLDHDLALPLCLLMAQQRNGVVFQEGGEKHLKLVGKLYDQCHDTLVQFGGFL
ASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQH
KVHKYITSCELVMAPVHEAVISLHLPKVWDDISPQFYATFWSLTMYDLAVPHSSYDREVN
KLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHVQRVLQRLKLEKDNWL
LAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRVFSDI
IYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPGFLTILRATGFDGGNK
ADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQAL
ERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHKDPPARNAVPATVQNG
PGGAGMPTSLTINTVRLEEGATEETADKLKEKSQGVVKVINKTVNATPKVTTSNGNSASN
SKIIKEKDDKEKSGKEKDKEKKDKTPAATPEMKALGKDGKDKPKEERANKEEKAREIKEK
TPKSDKEKEKVKKEEKASKEEKSKTVVTIIESKSTAEKEREKEPSRERDLAKEMKSKENA
KGGEKVPVAGSLKSPVPRSETSESEREQKRRKVDTHSSPSHSSTVKGTAMLPKVPLVSEN
YSSSRVISVHFLQDNLNELKESSAKHYINHTTPTLSKSKEREVEKKDLDKSRERSREREK
KDEKDRKDRKRDHSNSDREVPQDSTKRRKEENGTTGSSKHSKSESPSDSPRLNEKEKEKN
KSKSSGKEKGDSIKAEKMEKSSSGSKKESRHDKEKTEKKEKRDSTGGKEEKKHHKSSDKH
R
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgctcccggccgagtggataaagaactgggagaaaggcggcaagagcgag
tttgtgcagctgtgtcgtgctctcagtgaaaacaaaaatcatgatgtgggtttcagagat
attcagcaggctttgtatgagcttgcttaccacgttgtcagaggaaacttaaagcatgat
caagcttctaatgttcttggtgatgtcatagaattccgagaagacatgccttcaatccta
gctgatgtattctgcatattagatattgaaacaagttgtttagaagaaaaaaataagagg
gatcattttacacaactggtattggcctgtttgtaccttgtatctgacactgtcctaaag
gagcgtttagatccagagacactggagtcattgggactcatcaagcagtctcaacagttc
aatcaaaaatctgttaaaataaagacaaaactattttataagcaacagaagtttaatttg
ctaagagaagagaatgaaggttatgcaaagcttattgcagaattgggtcaagacttatct
ggaaatatcactagtgatttaatccttgaaaatatcaaatctttaataggatgtttcaat
cttgatcctaacagagttttggatatcatcctagaagtctatgagtgcaggcctgagtat
gatgatttctttgtaccactgatagagtcttacatgtacatgtgtgaacctcaaactcta
tgccatatccttgggttcaaattcaaattttatcaggatccaagtggtgagaccccttcc
tccttatacagagttgctgctgtccttttgcaacataatctcatagatttggaagatctt
tatgttcatcttctaccaggggataatgccatcattgaggaacacaagcgagagatagtg
gaagctaaacaaattgtcagaaaacttaccatggttgtcttatcatctgaaaagactgag
gaaaaggagaaagaaaaggaaaaagaggaggagaaaacggaaaagcctcctgataatcaa
aaacttggcttattggaagccttattaaaaattggtgattggcaccatgcacaaagcatt
atggatcagatgcctccgttttactcgacttcgcacaagccgatcgccatcgcgctttgc
cagcttgtccatgtgaccattgagcctctgtaccgcagagttggtgtacctaaaggagct
aaagggtcaccaatttcctctttgccaaacaagagagcaccaaaacaagcagagagcttt
gaggaattgagaaaggaagtgttcaacatgctttgttaccttggtcctcatctgtcccac
gatcctattctatttgcaaaagtagtgcgccttggaaaagcatttatgaaagagtttcag
tctgatggaagcaaacaggaagataaagagaaaatggaaacactgttcagctgtttgttg
agtattactgatcaagtcttgcttccatctctttccttgatggactgcaatgcatgcatg
tctgaggaattatggggaatgttcaaaacctttccataccagtatcggtaccgcctctat
gggcaatggaagaatgaaacatacaacagtcacccactgcttgtgaaagttaaagcccaa
accatagatagagccaaatacatcatgaagcgtttaactaaggaaaatgtgaaaccctct
ggaagacaaattgggaagctcagccacagcaatcctacaattttatttgattacatttta
tcacaaatacaaaaatatgataacttgataactccggttgttgattcgctgaaatacctc
acttccctgaactatgatgtcttggcatattgtatcattgaagcattggcaaaccctgag
aaggagagaatgaagcatgatgacactacaatctcaagctggctgcagagtctggcaagt
ttctgtggtgctgttttccgaaaatacccaattgaactcgcaggcctgctgcagtatgta
gccaaccagctgaaagctggcaaaagctttgatttgcttattttaaaagaggtagtgcag
aaaatggcagggatagaaattactgaagaaatgaccatggagcagttggaagccatgact
ggtggagaacagctgaaagctgagggtggatactttggccaaatcaggaatacaaagaaa
tcatctcagagattaaaagatgcattattggaccatgatcttgccctcccactgtgcctg
cttatggctcaacagagaaatggtgttgtctttcaagaaggaggggaaaaacatctgaag
ctggtgggaaaactgtatgatcagtgccatgataccctggtacaatttggtgggttttta
gcatccaatctaagcacagaggattacattaagcgagtgccttctattgatgttctctgt
aatgagtttcacacacctcatgatgctgcatttttcctctcaagacccatgtatgcacac
cacatttcatccaagtatgatgaactaaaaaaagctgagaagggaaataaacagcagcac
aaagttcacaaatacattacatcatgtgagttggtgatggctcctgttcatgaagctgtg
atttctctgcacctccctaaagtctgggatgacatcagccctcagttttatgctacattc
tggtctttaacaatgtatgaccttgctgtgccacacagcagctatgacagagaagtcaat
aaacttaaagtccagatgaaagccatagatgacaatcaggaaatgcctccaaataaaaag
aagaaagaaaaagaacgttgcacagctctgcaggacaagcttcttgaagaggagaagaag
cagttggagcatgtgcagagggttctacagagactgaaactagagaaagataactggctt
ctggcaaaatctaccaaaaatgagactatcaccaaatttttacagttgtgtatatttcct
cgctgcattttttcggcaattgatgcagtttactgtgctcactttgttgaactggtgcat
cagcagaaaacacccaatttctccacacttctctgctatgaccgagttttctctgatatt
atatatacagttgcaagttgcacagaaaatgaagccagtagatatggcaggtttttatgc
tgtatgctggagactgtgaccagatggcacagtgacagagtcatatatgaaaaggaatgt
ggcaactatccaggtttcctaactatattacgagcaactggatttgatggtggaaataag
gctgatcagttggattatgagaattttagacatgtggtacacaaatggcactataaatta
actaaggcttctgtgcactgtctggaaacaggtgaatatacgcatatcagaaacatcctg
attgtgctgaccaaaatccttccatggtatccaaaagtgctgaacctgggtcaagccttg
gaaagaagagtacacaagatatgtcaggaagagaaagagaagagacctgatctatatgca
ttggctatgggctattctggacagttgaaaagtaggaagcctttcatgatacctgaaaat
gaatttcaccacaaagacccacctgccaggaatgctgtacctgcaacagtacaaaatggg
ccaggtggtgctgggatgcctacgtctctcacaataaatacagttagactggaagagggc
gctactgaggagactgcagataaactaaaggagaagtctcagggtgtggtgaaagttatt
aataaaactgtcaacgctacaccgaaggtgacaacaagcaatggaaacagtgcatctaat
agcaaaattattaaagagaaagatgataaagaaaaaagcgggaaggaaaaagataaagaa
aagaaagacaagactccagctgccactccggagatgaaggcacttgggaaagatgggaaa
gataaaccgaaggaagaacgggcaaacaaagaggagaaagcaagagagatcaaggagaaa
acgccaaaatctgacaaagagaaggaaaaggtgaagaaagaagaaaaagcttcaaaagaa
gaaaagtccaagacggttgttaccatcattgagtcaaagtcaactgcagaaaaggagaga
gaaaaggagccatccagagaaagagatctagcaaaggaaatgaaatccaaggaaaatgct
aaaggaggagaaaaggtgccagtagctgggtccttgaagtcacctgttccccgatcagaa
acatcagaatctgaaagggaacaaaaacgccgcaaagttgatacacattcttctccgtca
cattcctcaacagtaaagggcacggccatgcttcccaaagtccctctggtttctgaaaac
tattccagctcacgtgtcatctccgttcattttctacaggacaacctcaacgaactcaag
gaatcttcagcaaagcactacataaaccacactactccaacactgtccaagagtaaggag
agagaagtggagaagaaagatttggacaagtcaagggagagatccagagagagagagaag
aaagatgaaaaggacaggaaagatcgaaaaagggatcattcaaacagtgaccgagaggtg
ccccaggattcaactaaacgacgcaaagaggaaaatggcacaactggttcttcaaaacat
agcaaaagtgaaagtccttctgattcccctcgcttaaatgaaaaagagaaggagaaaaac
aaatcaaagtcttcaggaaaagagaaaggtgattcaatcaaggcagaaaagatggagaag
agctcctctggtagcaaaaaggaatcaagacatgataaagaaaaaacagagaagaaagaa
aagcgggacagtactggggggaaagaagaaaagaaacatcataaatcttcagacaagcat
agataa
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integrated database retrieval system
