Agelaius tricolor (tricolored blackbird): 139597309
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Entry
139597309 CDS
T10815
Symbol
PASD1
Name
(RefSeq) circadian clock protein PASD1 isoform X1
KO
K09026
neuronal PAS domain-containing protein 2
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atrc03000
]
139597309 (PASD1)
Transcription factors [BR:
atrc03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
139597309 (PASD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_11
PAS_3
PAS
HLH
bHLH_IRO3
PAS_9
TED_2
DUF6863
Motif
Other DBs
NCBI-GeneID:
139597309
NCBI-ProteinID:
XP_071298585
LinkDB
All DBs
Position
Unknown
AA seq
801 aa
AA seq
DB search
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELCTMLQGHGHPLKMDKSTILQRTIDFLQK
QKEITAQTEACQIRQDWKPSFLSNEEFTQLMLEALDGFLIALTTDGIIIYVSDSVSSLLG
HLPSDLVDQNILNFLPEGEQSEVYKLLSPHVLMTDPVAADFLNAEKQIEFCCHLARGSLD
PNEPLMYEYVKFVVDFKYFTHVPTPSCNGFESAIARAFRSAPEEQICLVATVRLVTPQFL
KELCNVEEPCEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHADDLELLAR
CHEHLMQFGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHLVVSYAEVRA
ERRRDLGLEESSIELASSSLKSHSSYLEVGQCGSSQDASREGVSLSSHSSRRSSHTTLSD
STSTSSMRRTDTSTPTRAGAPGDKAALRLAAPGSAQPVYHFPTQLGMMHQLKEQLEERTR
ILQADIKTQQEELHVIKEQLQLVQDSNLQMLMQQPIPVILNAAVQQPSPRRPPQGTPRHS
TAKKSQQPALPGTKQHCSPHLLSPQPFLRDPCGTAPQVQQQKQQHPMRGSQGQQACVPGQ
GSIPVPFYNSPMVFSQAHPITVAAQVPTDSSERQPPADYSQDRSLRMLLDQSIQAMMPTA
NSSCQPVQSSASRQQGKFVAEQQSLAPPAAQVQPGTCSPARPPAPAPIFSPSLIVPHSSF
TSHQPSTPLHLHQWPQQQVQQHRLYLQMQGPELGAPTQRIFQPPHAPQQNPLSYFLHPQQ
QSHHTQGQPCNLPDLPEMQLP
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagatgagaaggacagggcaaagagggcatcacgcaacaaatctgagaagaag
aggagagaccagttcaatgtcctcattaaagagctttgcaccatgctgcagggccatggc
caccctctcaagatggacaagtccacaatactgcagaggaccatcgacttcctacagaaa
cagaaagaaatcacagcacagacagaagcctgtcagatcagacaagactggaagccttca
tttcttagcaacgaggagttcacccagttgatgttagaggcactggatggctttctcatt
gctcttaccactgatgggattattatttatgtgtctgatagtgtttcatctctgctggga
cacttaccgtcagatttggtggaccaaaatatattaaactttctgcctgagggggagcag
agcgaggtgtacaagctactttctccacatgtgctcatgacagatcctgttgcagctgat
tttctgaatgcagaaaaacaaatagagttttgttgccatttagcaagaggcagcttagat
ccaaatgaacccctgatgtatgaatatgtgaaatttgtagtggattttaaatattttact
catgtgcctacaccctcctgtaatggctttgagtcagctattgcacgggctttcaggtca
gccccggaggagcagatctgcctggtggccaccgtgcgcctggtcacgccacagttcctc
aaggagctctgcaacgttgaagagccatgtgaagaatttacatcgaggcatagtttagaa
tggaagtttttattcttggaccaccgggctccacctattataggatatttgccctttgag
gttctgggaacgtcagggtatgattactaccacgcagatgacctggagcttcttgctagg
tgccatgaacacttgatgcagtttggaaaaggcaaatcctgttactaccggttcctgacc
aaagggcagcagtggatatggctgcagactcactactacatcacctaccaccagtggaac
tccaagcctgagttcattgtttgcactcatctggtagttagttacgcagaggttcgggct
gagagaagacgagatcttggccttgaagagtcatcaattgaactggcatcctcttctcta
aagagccacagcagctacctggaggtggggcagtgcggcagcagccaggacgccagccgg
gagggagtgtcgctgtcctcgcacagctcccggcgctcctcgcacaccaccctgtccgac
tccacctccacgtcgtccatgcggcgcacggacaccagcacccccacgcgggcgggggct
ccgggggacaaggcggccctgcggctggcagcgcccggcagcgcccagccagtgtaccat
tttcccacccagctggggatgatgcaccagctgaaagagcagctggaggagaggactcgc
atcctgcaagctgacatcaaaacacagcaagaggagctccatgtcatcaaggagcagctc
cagctcgtgcaggactccaacctgcagatgctgatgcagcagccgatccccgtcatcctc
aacgccgccgtgcagcagcccagcccccggaggccgccccagggcacgcccaggcacagc
acggccaagaaatcccagcagccagccctgccggggacaaagcagcactgcagcccccac
ctgctgtcaccgcagccattcctcagggacccctgtggcactgccccccaggtacagcag
cagaagcagcagcacccaatgagaggaagccaaggccagcaagcatgtgtgccagggcag
ggcagcattccagtacccttctacaacagccccatggtgttctcccaagcacaccccatc
accgtggctgcacaggtgcccactgacagcagtgagaggcagccaccagctgactacagc
caggacaggagcctcaggatgctgttggatcagtccatccaagccatgatgcccacagcc
aacagcagctgccagcctgtgcagagcagtgccagcaggcagcaaggaaagtttgttgca
gagcagcagagcctggctcccccagcagcacaggtgcagccaggcacctgcagccccgcc
cggcctccagccccggcacccatcttctccccatccctcattgtcccacactccagcttc
acctcccaccagcccagcacaccacttcacctgcaccagtggccacagcagcaggttcag
cagcaccgcctctaccttcagatgcagggtcccgagctgggggctccaacgcagcgcatt
ttccagccgccccacgccccgcagcagaaccccttgagctacttcctgcacccgcagcag
cagagccaccacacacagggccagccctgcaacctgcctgacctgcccgagatgcagctg
ccctga
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