Agelaius tricolor (tricolored blackbird): 139598001
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Entry
139598001 CDS
T10815
Symbol
RAI1
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atrc03000
]
139598001 (RAI1)
Transcription factors [BR:
atrc03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
139598001 (RAI1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
139598001
NCBI-ProteinID:
XP_071299939
LinkDB
All DBs
Position
Unknown
AA seq
1921 aa
AA seq
DB search
MQSFRERCGFHGNQQSYQPTSQDTSRLENYRHQSQAGPNCERQRLVAKEYYSQQQLPYAG
YENSAVEKYHRGNKQLAGQQLQGRPAFSNYTVQENSPYPARYSGDESLQAWGGQPQALPG
GVAKYEDNLMKKTVALAGGRPYHEPAATSLPFRTHFQQQPQQQQQQQQQQQQQQPPALPY
PKLQRQKLPNDVSSPMPFSQSPHFGQHSQSFPASSTYSSVPGGSQPAHSYKSCTAPSGQP
PLERPLGSAASLAPGPRVPNLHGYQPNRIGYEQPPQPPPQPPQPPPPQPPQPPQPPQPPQ
PMQGRHHASETLHYQNLAKYQHYNQPGQTYCQGDAPPVRTPEQYYQTFSPSASHSPARSV
GRSPSYSSTPSPLMPNLENFQYSQQPLSAGAFPAGIADHSHFMPLLNPSPTDGTSPDAQS
GNCKNLQKEKLPENLLSDLSLQSLTALTSQVENISNTVQQLLLSKTAVPQKKGIKTPART
PEQLKGQHCSPESSTYSAEQVGTPLSDPLSTPQSVHAETQDTDYLSGSEDQLERSFLYCN
QNRSPARVNSNSKAKPESVSTCSVTSPDDMSTKSDDSFQSIHATLPLETFTKYVSNERDC
PRLLLSALSQEELASEIIVLQDAINEKADKAWANLPMLGKETTKSPFQMENHRPSLDSMV
KGAWPSQGDSSTLTEPLKLDKASGASTGKDFSEEVYEGPQVEFTATESKDVLKDTAPLAF
NSKPSIPAATSSAGATGYSCYSNTTANSVASENAMEHFEWPEESLGEACLRWKDLQATDL
PKGLFPSKLVSSCKEKKNACGLDLCDGEQPAKSEPVQDFGQQVMGEEEETLTYDEATKAD
SERWLQDTRHCCSAGDFSEIPIISSPDLKESDLEAEEYSSLCELAGSEQKSVTYDASPPK
PPEIPAVLSSSEVPVSAEETVSTVEKESSAPTPRLSGQSVILLGPAVGTETKVKSWFKSS
LPHIQPEEENGGGETSHLEAADAESASSVMVKQQLTPENVLGKVEPVSRGKSLRNKRVHC
RLPEGDGAGSTVLSPFDELPAASSVAGACLGPDGQTEVPSKSAQSQTPRFPAEGLPARMC
TRSFTALAEPRAPAPLEGLKAPAHQEKLGKKPGCGVKQRVAFKTRKRNSRPGPRVVQNAS
DATLLVPGLVAAEEVAGPTPLEGDAVEAGERDQRSMILRSRTKTQEVFYTKRQRGKRAAD
VRLKNCKAPKKLISNNHLPPAFKLPAPGSPHKEGKVGARMKLPKAGPGVGGKMSERPLHS
LKRKSTFISPIPTKKRNLVLRSNSGGVKEEKPEGPPSLFKKMPVAKKVKAKLPPKSSGEA
IPKPPLPKEAPDVCIKITSRAAFQEATKTKVLPPRKGRGLKLEAIVQKITSPNLKKFTCK
PAATAVAATVAAYGSSLSPAGAERERMVKHSGVAVAVGDARLPKLGAAQKVPTMPVAEPL
CRNPNGRAPKGKPGGGKKLPHDGCQGEACGSTPGTQSSPNMVAKNLGLLPKKRNRKGKAA
ALGMAKAPLSPPLPPALPRERVAGPGGAEEAPREKKPKTEEKEAGSSDGPPEGRSAAGPA
RGPKPRANHSNYNGYSKRQRKRLGHGKAKAVPARCKSRGKRRRQPQQAPLLHPAEPEIRL
KYISCKRLRADSRAPPFAPYVRVERRGEFSTTCTVVNSPGDEARLQRGPAGPAPRPRAAL
PASSTMHMGPVVSKALSAACLVCCLCRNPANYKDLGDLCGPYYPEDCLPKKKSRLKEKAR
AEGPGEDSAVPAAAERAPRGTEGGCGGKAARPEGAAEAAKQSSLRSSPRGMFRRLQSCYC
CDERTEGEEAAEKPRRHECHKAESPPQEPAGDTQEHWLHEACAVWTAGVFLVAGKLYGLQ
EAVKAAADLKCSSCQQAGATVGCCQKGCPHTYHYACAIDTGCLLTEESFSLRCPKHKRQP
V
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcctttcgagaaaggtgtggtttccatggcaaccagcagagctaccagccgact
tcacaagatacatcacgcctggagaattacaggcatcaaagtcaggcagggccgaactgc
gagcggcagaggctggtggcgaaggagtactacagtcagcagcagctgccgtacgcgggc
tatgagaacagcgccgtggagaaataccaccggggaaacaagcaattagcggggcagcag
ctgcagggcaggccggccttttccaattacaccgtgcaggagaacagcccttatccggcc
cggtattccggggacgagagcctgcaggcctggggaggccagccacaggcactgcccggt
ggtgtggccaagtatgaggacaacctgatgaagaagacagtggcgttggcgggcgggcgg
ccgtaccatgagccggcggccacctcgctgcccttccggactcacttccagcagcagccg
cagcagcagcagcagcagcagcagcaacagcagcagcagcagccgcccgcactcccctac
cccaagctgcagcggcagaaactgcccaacgatgtctcctcacccatgcccttctcacag
agccctcacttcgggcagcactcccagtccttccctgcctcctccacctactcctcggtg
ccggggggcagccagcctgcacactcctacaagagctgcacggcgccctcggggcagccg
ccgctggagcggcccctgggcagcgctgccagcctggcccctggcccccgtgtgcccaac
ctgcacggctaccagcccaaccgcatcggctacgagcagcccccacagccgccgccacag
cccccgcagccgccaccaccgcagcccccacagccaccacagcccccgcagcccccgcag
cccatgcaggggcggcatcacgcctcagagaccctccactaccaaaacctggccaagtac
caacattacaaccagccaggccagacctactgccagggcgatgcgccgcccgtgcggacg
ccggagcagtactaccagaccttcagccccagcgccagccactcgccagctcgctccgtc
ggcaggtccccgtcctacagctccactccctcccctctgatgcccaacctggagaacttc
caatacagccagcagcccctgagtgctggtgccttcccggctggcattgctgaccacagc
catttcatgccgctgctgaacccttctcccactgacgggacgagccccgacgctcaatct
gggaactgcaaaaacttgcagaaggagaagctgcccgaaaacctgctgtcagacctgagc
ctgcagagcctgacagcactcacctcccaggtggagaacatttctaacactgtccagcag
ctgctactctccaaaacggctgtgccccagaaaaagggcatcaagaccccagcgaggacc
cctgagcagctcaaggggcagcactgcagtcctgagagcagcacctactcggcagagcag
gtggggacccccctgtctgacccactgagcaccccccagtctgtccacgctgagacacag
gacactgactatctcagtgggtcagaggaccagctggagaggagtttcctgtactgcaac
cagaaccgcagccctgcccgcgtcaacagcaactccaaggcaaagcctgagtcggtgtcc
acctgctctgtgacctccccagatgacatgtccaccaaatcagatgactctttccagagt
atccatgccaccctgcccctggagaccttcaccaagtatgtgagcaatgaacgggactgc
ccccgactgctcctcagtgccctgtcccaggaggagctggcttctgagatcatcgtcctg
caggatgccatcaatgagaaggcagacaaagcctgggccaacttgcccatgctgggaaag
gagaccaccaagtcccccttccagatggagaaccaccggcccagcctggactccatggtg
aaaggtgcctggcccagccagggtgactccagcacgctcaccgagcccctcaagctggac
aaagcttcaggggccagcacagggaaggactttagtgaggaggtgtacgagggtccccag
gtggagttcacagccaccgaaagcaaggatgtgctgaaggacactgccccactggccttc
aactccaagcccagcatcccggcagcgacgtccagcgcgggagccaccggctacagctgc
tactcaaacaccaccgccaactcggtggcgtctgagaatgccatggagcatttcgagtgg
ccggaggagagcctgggtgaggcctgcctgaggtggaaggatctccaggccaccgacctc
cccaagggcttgttccccagcaaattggtgagctcctgcaaggagaaaaaaaacgcctgc
ggcttggacctgtgcgatggagagcagccagccaagagtgagccggtccaggactttggc
cagcaggtgatgggggaggaggaggagacactgacctacgatgaagcaacaaaggcagac
agcgagaggtggctgcaggacacccggcactgctgctcagctggggactttagtgagatc
cccatcatctcctctccggatctgaaggagtcagacctggaggcagaggagtactcctca
ctctgtgagctggctggctcggagcagaagtcagtgacgtacgatgcctcgccacccaag
cccccggagataccggctgtgctgtcctccagcgaggtgcctgtgtctgccgaggagacc
gtcagcacagtggagaaggagagctcagctcccaccccacgcctctctggccagtctgtc
atcctgctgggccccgctgtgggcacagagaccaaggtgaaaagctggttcaaatcctcc
ctgccccacatccagcctgaggaggagaatggtggaggggagacatcccacctggaggcg
gccgacgctgaatccgcctcgtcggtcatggtgaagcagcaactcacgcccgaaaatgtg
ctggggaaggtggagcctgtctcacggggcaagagcctccgcaacaagagggtccactgc
cggctgccagagggggatggtgccggcagcaccgtgctgagtcccttcgatgagctgcca
gcagccagcagcgtggccggcgcctgcctggggccagacggacagacggaggtaccgagc
aagagcgcccagagccaaaccccccggttcccagccgaggggctgccggcacgcatgtgc
acccgctccttcaccgccctggccgagccccgcgcccctgccccgctggagggactgaag
gcccccgcgcaccaggagaagctggggaagaagcccggctgtggcgtgaagcagagggtg
gctttcaaaaccaggaagcgcaacagccggccgggccccagggtggtccaaaacgccagt
gatgccaccctcctggtgcccggcttggtggcggcggaggaggtggcagggccaacaccg
ctggagggggacgcggtggaagccggggagagggaccagcggtccatgatcctgcgctcc
cgcacaaagacacaggaggttttctacaccaagcggcagaggggcaagcgggcagctgat
gtccggctgaagaactgcaaggcacccaaaaagctcatatccaacaaccacctcccacct
gccttcaagctgccagcaccgggcagcccccacaaggagggcaaggtgggtgcccggatg
aagctgcccaaagcagggccgggcgtggggggcaagatgtcggagaggccactgcactca
ctgaagaggaagtccaccttcatctcccccatccccaccaagaagaggaacctggtcctg
cggagcaacagcggtggcgtgaaggaggagaagccagagggtccccccagccttttcaaa
aaaatgccggtggccaagaaggtgaaagccaagctgccccccaagagctctggcgaagcc
atcccgaagccccccctgcctaaggaggcccctgatgtctgcatcaagatcacctcccgg
gcagccttccaggaggccaccaagaccaaagtgctgcctccccgcaagggccgtggcctc
aagctggaggccatcgtccagaagatcacctcacccaacctgaagaagttcacctgcaaa
ccagcagccacagcagtggcagccacagtagctgcctatggctcctccctgagcccggct
ggggcagaacgggagcggatggtgaagcacagtggggtggctgtggcagtgggcgatgcc
aggctgcccaagctgggggcagcacagaaggtgcccaccatgccggtggctgagccgctc
tgccggaaccccaatggccgagcaccaaaggggaagccgggtggtgggaagaagctgccc
catgacggctgccagggggaggcttgtgggtcaacgccgggcacccagtccagccccaac
atggtggccaagaacctggggctcctccccaagaagaggaaccgcaagggcaaagcagca
gcgctgggcatggccaaggcgcccctgagccctccactgccaccagcactgccccgggaa
cgtgtagccggcccgggcggtgcggaggaggcgccgcgggagaagaaaccaaagactgag
gagaaggaggcggggagcagcgatggccctcccgagggccgctccgccgccgggccggcg
cgggggccgaagccgcgggccaaccactccaactacaacggctactccaagcggcagcgg
aagcgtctgggccacggcaaggccaaggcggtgcccgcgcggtgcaagagccgcgggaag
cggcggcggcagccccagcaggccccgctgctgcaccccgccgagcccgagatccggctc
aagtacatctcctgcaagcggctgcgggcggacagccgcgccccgcccttcgctccctac
gtccgcgtggagcggcgcggagagttctccaccacctgcaccgtcgtcaactcgcccggc
gacgaggcgcggctgcagcggggaccggccgggccggcgccgcggccgcgggcggccctg
cccgcctcctccaccatgcacatggggccggtggtgtcgaaggcgctgagcgccgcgtgc
ctggtctgctgcctctgccgcaaccccgccaattacaaggacctgggggacctctgcggg
ccttactaccccgaggactgcctgcccaagaagaaatcccggctgaaggagaaggcgcgg
gcggaggggccgggcgaggactccgccgtgcccgccgcggccgagcgggcgccccgcggg
actgagggcggctgcggcgggaaggcggcgcggcccgagggggccgccgaggcggccaag
cagagctcgctgcgctccagcccgcggggcatgttccgtcggctgcagagctgctactgc
tgtgacgagaggacagagggcgaggaggcggccgaaaagccccggcggcacgaatgtcac
aaggccgaatcgccgccgcaggagccggcgggcgacacgcaggagcactggctgcacgag
gcctgtgccgtatggaccgctggggttttcctggtggcagggaagctctatgggctgcag
gaggctgtcaaggcggctgccgacctgaagtgctcgagctgccagcaagcaggagccacc
gtgggctgctgccagaaggggtgtccccacacctaccactacgcgtgtgccatcgacaca
ggctgcttattaactgaggagagcttctctctgagatgtcccaaacataagaggcagccg
gtgtag
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