Agelaius tricolor (tricolored blackbird): 139598198
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Entry
139598198 CDS
T10815
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
139598198 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
atrc01001
]
139598198 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
atrc04054
]
139598198 (CIITA)
Enzymes [BR:
atrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
139598198 (CIITA)
Protein kinases [BR:
atrc01001
]
Serine/threonine kinases: Other
TAF1 family
139598198 (CIITA)
Pattern recognition receptors [BR:
atrc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
139598198 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
LRR_8
NB-ARC
LRR_14
nSTAND_NTPase5
RsgA_GTPase
NPHP3_N
nSTAND3
AAA_19
Silic_transp
nSTAND6
Motif
Other DBs
NCBI-GeneID:
139598198
NCBI-ProteinID:
XP_071300344
LinkDB
All DBs
Position
Unknown
AA seq
1124 aa
AA seq
DB search
MDSVFVPENGYLDLLHSDIDPLHLCTFFDPKSSGDEEGDFSTDLEVDASNYEQLNNMDFS
YENGDGFYPCCNTTDAYAKIAELVDYVLKDQQEKQVEDIFAGNLILDDIAAENTEKFPDI
KMQSCLKRTFLSSASESYCDASEPKYKKIVEVPAASAGSGSFFAMPLNSHPVSCTSLTNQ
HMSCSVPAAHGLERSLIIPGLSEPLTSEFLPVSVKGYQENPGLAGPPQQIFNFVLENGTS
DVIIYPALTSSMETFMSPVFPVNLCAQPTYATAPGIPDAAADKLAYLEKFQEVQDSIIPS
EEPFKRPEQVETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDGTLVQSQTETKTGKNSAK
AMEKELVTCSLQEKEKIAIDRSQIFQIPQRKDLETKVIVVLGKAGMGKSILIQKICQDWS
NGEFSQFEFVFWFDCKQISLPEKQYSLKELLLEFFVKPQEGSKEIFEYMLQNPDKVLLIF
DGFKGLHDHENFPRCSASQPEKDLCSIKELLSGLIQKKILNGCTLLFTARPKDKLYQYMS
KVDKTIEIVGFSPQQRELYITKYFEESLYCDCALKLIKECEYLFSHCYSPVMCRFVCFLC
EAMLEMGEKSLPSTLTEVFLKFFQQKIMFLQTDVTTTQNQENLATLARVAWCLGEKHQSA
MKSDLIPSKEVKEFALKYGFFLPFAFPKHSDSEEEEFGCTFSDFVIQNFLCALHLLLAEE
LKDKNLTKYLSFLSKKKKPYNWLDLMPRFVAGLMFLQDDPCFRSLSNEDEKQSTKKQKTL
LKYIRRLQINTLCPERLLELLCCVYETQNNYLLQHVALRLEPKLSFLGIALTPPDVHVLH
SILKRSRKEFSLDLRNSSIDMQGLQALVSLRNVTSFRASLSDTVRLWKSLEQTKDYELLK
ASTEKFVLDPFKAKTMKDISDLSDLVEMQEKMINCVQEASGCTSYEIPAIRNLRKLEFAL
GPACGLQGLLKLVKILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQ
NKITDLGAENLAAALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKIT
GVGAQQLTDSLRKCPHMKNLVMWNPTIPYGVLEHLHQLDSRISV
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtatttgtgcctgaaaatggctaccttgatttactgcacagtgatattgac
ccattgcatctgtgtactttctttgatcctaagtcatctggagatgaagaaggtgacttc
tctacagatcttgaagttgatgccagcaactatgagcagttaaataatatggatttttca
tatgaaaatggagatgggttctacccctgttgcaacaccacggatgcttatgctaaaata
gctgaattagtagactatgtgctcaaggatcagcaggagaagcaggttgaagacattttt
gcagggaaccttattttggatgacattgctgctgaaaacactgagaaatttcctgacata
aagatgcagtcatgccttaaacgaactttcttaagctctgcctcagagagttactgtgat
gcttcagaacccaaatataagaaaattgtggaggtccctgcagcttctgcagggagtggc
agtttctttgctatgcctctcaacagccacccagtgagctgcacctccctaactaaccag
cacatgtcctgttctgttcctgctgcccacgggctggaaagaagcctcatcattcctgga
ttgtcagaacctttgacctcagagttcctaccagtcagtgtaaaagggtaccaagagaat
ccaggcttggcaggtcctcctcagcagatatttaactttgttcttgaaaatggcacatct
gatgttataatatatccagcactgacatcttccatggaaacattcatgtctccagttttt
cccgttaatttatgtgcacaacctacgtatgccacagcccctggaattccagatgcagcg
gcagataaattagcatatttagagaaatttcaagaagttcaagattccataattccttct
gaagaacctttcaaaagaccagagcaagtggaaactttctgctcatcccttaaggattat
ttccgagacacgtgcaaatctgtgaccatggagcgggaagtaaatctggatcacctgttc
attgatgggacacttgttcaaagtcaaactgaaaccaagactggaaagaacagtgcaaaa
gcaatggaaaaggagctggtaacctgcagcctgcaagagaaggaaaagatagccattgat
agaagccaaatatttcaaatcccacagcgtaaagacttagagactaaagtgattgtggtg
ctgggaaaagcaggaatgggcaaaagcattctcattcagaagatctgccaggactggtcc
aatggagagttttctcagtttgaatttgtattttggtttgactgcaaacaaataagcttg
cctgagaagcaatacagcctgaaggaactgctgcttgaattttttgtaaaacctcaagag
ggaagcaaagagatctttgagtatatgttgcaaaatcctgataaagtccttctgattttt
gatggttttaaagggttgcacgatcacgagaattttcctcgttgctcagccagccagcct
gaaaaggatttgtgcagcataaaggagctgctttcaggactcatccaaaaaaagatactc
aatggctgtactttattatttacagcaagaccaaaagacaaactgtaccagtacatgtcc
aaagtggataagactattgaaattgtaggattttcccctcagcagagagaattgtacata
accaaatactttgaagaatcactctactgtgattgtgcactgaaattaatcaaagagtgt
gagtacttgttcagtcattgttacagtcctgttatgtgtagatttgtttgttttctctgt
gaggccatgcttgaaatgggagagaaaagtcttccttcaactcttactgaagtcttcctg
aaattttttcagcagaagataatgtttctgcaaacagatgttacaaccacacaaaatcaa
gagaatcttgctaccctagctcgtgtagcctggtgtcttggagaaaagcaccaaagtgca
atgaaaagtgatcttattccttctaaggaagttaaagagtttgctctgaagtatgggttt
ttcctgccatttgcattccccaaacattcagatagtgaagaagaggaatttgggtgcaca
ttctctgattttgtcattcagaatttcttgtgtgcacttcaccttttgctagcagaagag
ctcaaggataaaaatctgacaaagtacctgtcttttctctccaagaagaaaaaaccttat
aactggttagatttaatgcctcggtttgtggctggtttgatgtttctccaggatgatccc
tgcttccgctctctttcaaacgaggatgaaaagcaatcaaccaagaagcagaagacactc
ttgaaatacattagaaggctgcagattaatactctctgtccagagagattgctggagctt
ttatgttgtgtttacgaaacacagaacaattatcttctgcagcatgtggccttaaggcta
gagcccaagttgtcttttctgggcatagctcttacaccacctgatgtccatgtactgcac
tctattctgaaaaggtcaagaaaagagttttccttggatttgcggaacagcagcattgac
atgcaagggctgcaggccttggtcagcctgaggaatgtgacatcgttcagggcttccctc
agtgacacagtcaggctctggaaatctttagaacagacaaaagactacgaactgctgaaa
gcatccacagagaaatttgttcttgatccctttaaggcaaagacaatgaaggacatcagt
gacctctccgaccttgtagagatgcaggagaagatgattaattgtgtgcaagaagcatct
ggttgcaccagctatgaaattcctgccatcaggaacctcagaaaactggaatttgcgctg
ggtccagcatgtggccttcaaggattgctaaaactcgtgaaaattcttgcagcatttcca
tcacttcagcatttagaccttgatgctctgagtgaaaatggcataggagatgagggagca
aagagtctatctgaagtctttccaaccctgacatcactggaaacattaaatttatcacag
aataaaataacagacctgggtgcagagaaccttgctgcagctctcccttccttgtcttcc
ttaaaaacactaagcttgtacaataacaacatttgtgattttggagcagaaaatctggca
aaggttcttcctgcaatgacatctttaagagtgctagatgttcagtataacaaaataact
ggtgttggagcccagcagctgactgacagcctacgaaaatgtcctcatatgaagaacctg
gtgatgtggaatcccaccattccctatggagttcttgaacaccttcaccagctggactcc
aggatcagtgtgtag
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