Agelaius tricolor (tricolored blackbird): 139598406
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Entry
139598406 CDS
T10815
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03440
Homologous recombination
atrc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
139598406 (PALB2)
03460 Fanconi anemia pathway
139598406 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atrc03400
]
139598406 (PALB2)
DNA repair and recombination proteins [BR:
atrc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
139598406 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
139598406 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
139598406
NCBI-ProteinID:
XP_071300855
LinkDB
All DBs
Position
Unknown
AA seq
1298 aa
AA seq
DB search
MEAPPAAAALSGADKEKLREKLELLRREYSETVIRLRRARRAERARSHGRRERSPTGGSR
GERGAPGSRDNTSPSPDRDGPSQLQTKTCSDAGTEKTTSATVKHIPEFSSDEVSPQDSSR
AESFQARQENLCCGTISPVPVEKKPQTSRGMMKLRRRTKALESKERESVHDVHLISTGEM
MKNQIASAEELQSPVFRHSSLLHTEEPAQRAPGAVLVQGERNSFTPDAASGLVQDVFGGS
VTAGEPELSPHALRDSRDTWQPEPSRAVATPDGHEPCSQHGDSVLLDPRGDGREESPSRI
KQPEGQSLYEDQGELRGLLDLMSENEILPDSRNTSITKESNNHEGHQSDTNTVNPCPADK
ALDTAEELLENQQLEIESRLSPAAKVVAPEGTLSSCTVVEGLLFPVEYYVRTTRRMSNCQ
RKVDLDAVILSQLGRSKKGQRSKCKQKDANPNQPLQERAEGDLEPGVEPFPFLGAEDDQA
NSSSSQKSLPASSNSSTSLESISQKSITSTRQEQRQSQRKQKGRRKSACKAPMHPVSQEL
IESQDPTMANESSALLSNENQSEKENCDANLERSSSDERRLSGAAALGPTGPGVTGATQP
VCPDPPPGGSQVPGKCHKALLEQVQNPLHSSDSLSPGSDASASAAGCQGHKHPVQRGKRQ
RGAEQLPGGSVPLRRSLRCSARHRPPTGSPDDSSRGCSSAMGPQGPAALGLPAADPDTRG
SLFSFRSLQWLVPKLGIRDFHLPNEEFGVLKLEKLKSSPVNDLEDFVSEDGVAPEDTPDA
QMKPKEKSLRSNLILPSKTGLPELPCMEGLTSKKELSTHELLFTPMGTVLEAPAHPEPEI
SSSVFPAVGATPGVLPSVHTEVFPDTPSVPALPVTPPSPRGAAALVLGDVAHRDPAVPLH
PDTCAAGAARNQKEQGTALPSAAERGPENKSDETVSLEKHQQPENKEQESCRASPEQIKD
AAEPLTAALPDGPREESLQFVSELKEPWCSGAVDVAAVCWAAAGCRELRVVTACESAVSL
WQPRAPAGWARVHTWHFREIPVIQIVPLPDTCNLVCVALGELEIGEIRLLLYSSETDSFK
HCLVKTGNIKAVAGLKDWRLVSSSRTMQEQQVEMFVLSETGGSKDRQTLMPPEETVTAFA
EVEGMREALVGTTAGNSVVVWNLRTGQLLRKMHVGYSYPASICHRAYSDSGLLFVVLSHP
HAKESESCGSPAFRVVAFNPRTGRGAPVTSSCLPPGPAGRRVLGLGGLGWLLRGFGRALA
GIQGPSPRDRGCIRPCVCAVPAWGCELLPAHFPLQAVP
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggaggccccgccggcagcggcggccctgagcggagccgacaaggagaagctgcgggag
aagctggagctgctgaggcgggaatacagcgagaccgtcatccggctgcggcgggcacgg
cgagccgagcgagccaggagccacggccggcgggagcggagccccacaggtgggagccgg
ggagaacggggcgctccaggttctagagataacacatctcctagtcctgacagagatggg
ccctctcagttacagactaaaacctgctctgatgctggcacggagaagacaacatctgcc
acagttaagcacattccagaattctccagtgatgaggttagccctcaggacagctcccgg
gcagaaagctttcaggccagacaggaaaacctgtgctgtgggaccatcagtcctgtccct
gtggagaaaaagccccaaacctcccgaggcatgatgaagctgcggagacggacaaaggct
ctggaatcaaaggaaagggaatcagtgcatgatgtgcatctaatcagtactggtgaaatg
atgaaaaatcaaattgccagtgcagaggagcttcagtcaccagtgttcaggcacagcagc
ctcttgcacactgaggaacctgctcaaagggcacctggggcagtgcttgtgcagggagaa
agaaatagtttcactcctgatgcagcatcagggcttgtacaggatgtgtttggtggcagt
gtcactgcaggagagcctgagctgtccccacatgcgctgagggacagcagggacacctgg
cagcctgagccctcaagggctgtggccacacctgatggacatgagccgtgttcacagcat
ggagattctgttttacttgaccccagaggtgatggcagagaagaatcccccagtagaata
aaacagccagagggtcagagtttgtatgaagatcagggagaattacgtgggctcctggat
ttaatgtcagaaaatgaaatattgcctgacagcagaaataccagcataaccaaggagagc
aataaccatgaaggacatcaaagtgacactaataccgtgaatccctgtcctgcagataaa
gctctggacactgctgaagaactgctggagaatcaacagcttgaaattgagtcaaggctc
tctcctgctgccaaggtggtggctcctgagggcacgctgagctcctgcacagtggtggaa
gggctgctcttccccgtggagtactacgtccggacaacgcgccgcatgtccaactgccag
aggaaggtggacctggacgctgtcatcctcagccagctgggcaggagcaagaaaggccag
cggagtaaatgcaagcagaaagatgcaaaccccaaccagcccttgcaagagagagctgag
ggtgatttagagccaggggttgagcccttcccttttcttggggcagaagacgatcaagca
aactcaagtagttctcagaaatctcttcctgcatccagcaacagcagcacttctctggaa
tccatttctcagaaaagcatcactagcacaaggcaagagcagagacaatcccagaggaaa
cagaagggaagaagaaagtctgcctgcaaagcccccatgcatccagtgtcacaagagctt
atagagagtcaggatcccacaatggccaatgaaagcagtgctctgctgtcaaatgagaac
cagagtgaaaaggaaaactgtgatgctaaccttgaaaggtcttcttcagatgagaggaga
ttgtctggtgctgcagcactggggcccacagggccaggagtgactggagctacccagcca
gtgtgtcctgaccctcctccaggtgggagccaagtgccaggcaagtgccataaggctctg
ctagagcaggttcaaaacccactccacagcagcgattccctgagcccagggagcgacgct
tctgccagtgctgctgggtgtcagggccataaacatccagtgcagcgagggaagaggcag
cgaggagccgagcagctgcccgggggcagtgtccctctgcgccgctccctgcgctgctct
gccaggcacaggcccccgacgggctcaccagatgacagcagcagaggatgcagcagtgcc
atgggtccacagggtcctgctgcccttgggctccctgctgcggaccccgacactcgtggc
tccctcttctccttccgcagcctccagtggctggtccctaagctgggcatcagggacttc
cacttaccaaatgaggaatttggagtgctgaaactggagaaattgaagtcatcccctgtg
aatgacttggaggattttgtgtctgaggatggtgtggctccagaggacacaccagatgca
caaatgaagccaaaagaaaaaagtctcagaagtaatttaattttgccttccaaaactgga
ttgcctgaactcccttgcatggaaggcctgacttccaagaaggagctttccacccatgaa
ttgctgtttactcccatggggactgtcctagaggctcccgctcaccctgagcctgagatt
tcctcgtctgttttccctgctgtgggtgcaaccccgggtgttttaccttcagtgcacact
gaggtgttccctgacacaccttctgtacctgccttgccagtgaccccaccttcccccaga
ggagcagctgccctggtcctgggggatgtggcacacagagaccctgctgtgccactgcac
cctgacacctgtgctgcaggggctgccagaaaccagaaggagcaaggtacagcattgcct
tcagcagctgaaagaggtcctgagaacaaatctgatgagactgtgtccttggagaagcat
cagcagccagagaacaaagagcaggaatcctgcagagcctcacctgaacagataaaagat
gcagcagagccattgactgcagcactgccggatggcccccgagaagagagcttgcagttt
gtctcagagctaaaggagccctggtgctcgggcgcggtggacgtggccgcggtgtgctgg
gcagcagctggctgcagggagctgcgcgtggtcaccgcctgcgagagcgctgtgtccctc
tggcagccacgggcccccgctggctgggccagggtgcacacctggcacttcagagagatt
cctgtaatccagattgttcctctgccagacacctgtaacctcgtgtgtgtagcactggga
gagctggagattggagaaataaggctcttgctttattcttctgagactgactcattcaag
cactgcctagtgaaaactgggaatataaaagcagttgctgggctaaaggactggaggctg
gtgagcagcagcaggaccatgcaggagcagcaagtggagatgtttgttctctcagagaca
ggggggagcaaggacaggcagactctgatgccccctgaagaaacggttacagcctttgct
gaagtagaagggatgagagaggccttggtgggcaccactgcagggaacagtgttgtggtt
tggaatctgagaactggtcagctcctgaggaagatgcacgttggttattcctacccagct
tccatctgccatcgagcgtattctgactccggccttctgtttgttgttttgagccaccct
catgccaaagagagcgagtcctgtggaagcccagcgttccgcgtggtggccttcaacccg
cgcacgggccggggcgcgccggtgacgtcctcctgcctcccccccggcccggcaggcagg
cgagtcctggggctgggcgggctgggctggctcctgcggggctttgggagagccctggcg
gggatccaggggccatctccccgtgataggggctgcatccggccctgcgtgtgtgcggtg
ccagcctggggctgtgagctgcttcctgcccacttcccactgcaggctgtgccctga
DBGET
integrated database retrieval system
