Agelaius tricolor (tricolored blackbird): 139599056
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Entry
139599056 CDS
T10815
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139599056 (COL17A1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139599056
NCBI-ProteinID:
XP_071302120
LinkDB
All DBs
Position
Unknown
AA seq
1538 aa
AA seq
DB search
MTSLIQQRCCCATDIAHSYAFVTPDRSLGDESGLAGGNDMDSVTKKTRQDGSEVTERQGG
SSSGLKTSSHTGGSGVEKRSYTHGSSYVTSGGSSRLNSASSSSSYRQAQSPSSTLTKSPG
STFERKTYVNRHATYEGSSSANSSPEFPRKDFASASTRGRSQSRESEIRVRLQSASPSGR
WTELDDVKRLLKGSRSASCSPTRSSSGTLPIPKKAVVETKMVTESSQSVSGTYDTTILNT
ALPSYMWSSTLPAGSSLGGYHNSSSLINAMSHSTGSVFGVPNNLAPSNHTLNAGLSSSST
VFGVQNNLSPTSSATQNATTTSASQQQTYGMKNTSQSNTMASTGGSASAGGTVVSSQGDD
ILRKDCKFLLLEKEKAPAKEMELLVMTKDTGKVFSASNSGLSGGSFGEDTLKKEKQGFSS
SYATDTGLKSDANGGLKSMPKRDKETYAEIRSGDAGGAIGSAPSWCPCGSCCSWWKWLLG
LLLAWLFLLGLLFGLIALAEEVRKLKSRVEDLEKINGGLLAINQGNSKIEKDVSRVDFLH
GNSLSSTFPYENEESVWLMVKSRLNKEIERGYFRGERGERGEKGDMGIQGPKGDRGLPGA
PGIPGPIGHAGPEGPKGQKGSMGEPGMEGPMGQRGREGMPGPRGEPGPPGFGEKGDRGAI
GEPGPPGPPGPPGSTGLKGLMGSPGPQGPPGPPGLQGFRGEAGLPGAKGEKGASGPPGPK
GDQGEKGSRGMTGEQGSRGIPGPPGEPGAKGPAGQAGRDGQPGEKGEPGLMGMPGARGPP
GPTGDAGEPGLTGPQGPPGLPGNPGRPGAKGEPGAPGKVISAEGSSTITLPGPPGPPGPP
GPTGPPGVPGPVGPAGLPGQQGPRGEKGSPGEAVIETIRTEVSSLASQMLGDVQGRAGPP
GPPGPPGESVQGPPGPRGPPGEGLPGPPGPPGRPGSSMSTSEAFFTGPPGPPGPPGPKGD
QGERGPRGFTGEPGDPGLSAFSSHGERVTIQGPPGPPGPPGPKGDAGVPGAPGIPGASRG
GSRQIQGPPGPPGPPGPPGPSGGSSQEIQQYVTDYLKSDNVRHYFTGAQGPPGPPGPPGL
ITTADGMTLDYAELATRVMSYMTSSSGRYESYSSSVSTTSILYQELLDLLQREEIRQYLI
GPRGPPGPPGPGGDGMSLSLDYDELTRRFISYLSSSGMSIGLPGPPGPPGSPGISYSDLT
AYLRNSEFSGVVGPPGPAGPPGPPGIPGSPGTSLEDISAYLQNVGYSSLSGIRGPPGPPG
PPGPPGFSGTGLLSYADITNSDEFRSELIQYLKSDEVRSYISGPPGPPGPPGPKGDSGFV
SGSMSSSYQGLRASEHLHGGSLGAEGSHGDSVGTGSSYGSSMSSRSSYHASVGSDGAYDA
AMGTAGSFDGLLTEEESHRSSAGSSRSYSNFFTGSLDYNELALRVSESLQSRGILQDLMS
YTAQGPAGPPGPPGPPGISKVFAAYGNVTADLMDFFRTHGAIQGPPGEKGERGYRGPKGD
PGPMGPPGRHGHRGPKGEKGEKGEQLYVGRRKRRAVGV
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atgacttctctgattcaacagcgctgttgctgtgccacagacatagcccacagctatgcc
tttgtgactccagataggagcctgggagatgagtcaggcctggcaggtggcaatgatatg
gattctgtaacaaagaaaacgaggcaagatggatcagaagttactgaaagacaaggaggg
agcagcagtgggctcaaaacatcatcccacactggagggagtggagtggaaaagcggtcg
tacacccatggaagcagctatgtgacttcaggtggaagtagtagattgaattcagcatca
tcatcctccagctacagacaagcccagtctcccagctctactctcaccaaatcacctggc
tcaacatttgaaagaaaaacctatgtcaaccgccatgcaacatatgaagggagctccagt
gccaactcttctcctgagtttcccagaaaagattttgcatctgcctctacgagagggaga
agccaaagtcgagagagtgaaatacgagtccgactgcagagtgcgtctccctctggcaga
tggacggagttggatgatgtgaaacgtttgctgaaaggaagtcgatctgccagctgcagc
cctactcggtcatcatccggtaccctcccgataccaaaaaaggccgtggtggagacaaag
atggtcactgagagctctcagtcagtgtcagggacatatgacacaaccatactgaatact
gccctcccttcatacatgtggtcctctactctgcctgctgggtcttcccttggtggatac
cataacagctcttccttgatcaatgccatgtctcactctacaggatcagtttttggtgtt
ccaaataacctggctcccagcaatcatactctgaatgcgggcctgagctcttcctctaca
gtatttggagttcaaaacaatctgtctccaacatcttctgcaacccagaatgctacaaca
acctctgcaagtcagcaacaaacatacgggatgaagaacacttctcagagcaacaccatg
gcaagtactggtgggtctgcctcagcaggaggaactgttgtgagctcccagggagatgac
attctgcgcaaagactgcaagttcctgctgctggagaaggagaaggcacctgcaaaggag
atggagctcttggtcatgacaaaggacactggcaaagtctttagtgcttctaactctggg
cttagtggaggatcttttggagaagacaccttgaagaaagagaagcagggattttcctcc
tcttatgctacagatactggcctaaaatcagatgcaaatggagggctgaaatctatgcca
aaacgggacaaggaaacttatgcagaaatacgaagtggtgatgcaggaggtgcaattgga
tcagcaccatcctggtgtccttgtggttcctgctgtagctggtggaaatggctcctgggt
ttgcttctagcctggttgtttctccttggattgctttttggactcattgctctggctgaa
gaagtgagaaagctgaaatctcgtgtggaagacctggaaaaaatcaatggtggcctcctg
gcaattaaccaagggaattcaaaaatagaaaaggatgtttcaagagtagattttcttcat
ggtaactcactctcctcaaccttcccatatgaaaatgaagagtcagtctggttgatggtg
aagagcagactgaataaggaaatagaacgaggctacttccgaggggagagaggagaacgt
ggtgagaaaggtgacatgggaatacaaggtcccaaaggtgatcgaggacttcctggtgcc
ccaggcattcctggtccaattgggcatgcaggaccagaaggaccaaaaggccagaaggga
agcatgggtgagcctggcatggaaggtcccatgggacaaagaggtagagaagggatgcca
gggcctcgaggggaaccaggaccacctggatttggagaaaaaggagacagaggtgctatt
ggtgagccaggtcctccagggccacctggacccccaggttctactggcctaaaaggtctg
atgggttctccaggcccacaaggtcctccaggtcctcctggcctacaaggatttagaggt
gaagcaggactcccaggtgctaaaggtgaaaaaggagccagtggaccccctggacccaaa
ggtgatcagggtgagaagggttctcgtggaatgacaggtgaacaaggctcaagaggaata
cctggacctccaggagagccaggggctaaaggacctgcaggacaagctggtcgtgatgga
cagccaggtgaaaaaggtgaaccaggtcttatgggaatgccaggtgccagaggccctcca
ggacccactggagatgctggagagccaggtcttacaggaccccaaggaccaccaggactt
ccaggcaaccccggccgaccaggggctaaaggagaacctggagctccaggaaaagtcata
agtgcagagggttcatcaactattactctgccaggcccaccagggcccccaggcccacct
ggccccactggtcctccaggtgttccaggtcctgttggaccagctggtctccctggacag
caaggtccacggggtgagaaaggatccccaggtgaagctgtgatagaaaccatcagaaca
gaagtctcatcattagcatctcaaatgctgggagatgtacaagggcgagcaggaccacca
ggtccccctggaccaccaggtgaatctgtgcaaggaccccctggacctcgtggtccccca
ggagaaggattgccaggacccccaggcccaccagggagaccagggtcatccatgtccacc
tcagaagcattcttcacaggcccaccaggtccaccaggaccaccaggcccgaagggagac
caaggtgaacgaggcccacggggattcacaggagaaccgggtgatcctggcctttcagca
ttctcctcccacggtgaaagagtcaccatacagggacccccaggcccacctggcccacct
ggaccaaaaggtgatgcaggtgtcccaggtgcacctggcatcccaggagcatctcgaggt
ggatccagacaaattcagggacccccaggacctcctgggccacctggtcctcctggccca
agtggaggttcatctcaagagattcagcagtatgtcactgactacctgaagagtgacaat
gtcagacattatttcactggtgcccaaggcccaccaggccctccaggcccacctggactc
atcaccactgcagatgggatgaccttggattatgcagagctggctacccgtgtcatgagc
tatatgacaagctcttcaggtcgctatgagtcatattctagctcagtatccactacatcc
attttgtaccaagaacttctggacttgctgcaaagagaagaaattcgccagtatctcatt
ggacctcggggcccaccgggacctcctgggccagggggagatggaatgtctctgtcactg
gattatgatgagctgaccaggaggtttatcagctacttgtcaagttctgggatgagcatt
ggactgcctggaccacctgggcctccagggtcacctggcatatcttacagtgacctgaca
gcgtacctgcgaaactctgaattcagtggtgttgttgggccccctggtcctgcaggcccc
ccaggacctccagggatccctggatcaccaggcacctctctggaggacatctctgcttac
cttcaaaatgttggatactcttccctttctggaatccggggcccacctggccctcctggc
cctccaggaccaccaggtttctctggaactggcctcctgtcctatgctgacatcaccaac
agcgatgagttcaggagtgagctgatccagtacctgaagagtgatgaagttcgaagctac
atctcaggaccccctgggcccccaggaccaccaggacccaaaggagacagtggctttgtg
tctgggtctatgtcttcatcataccaagggttacgagcttctgagcacttgcatggagga
tcccttggtgctgagggctcccacggggactcagtgggcacaggcagctcatatggcagc
tccatgagcagcagatcctcttaccacgcctcagtgggcagcgatggcgcttacgatgcc
gccatgggcactgctgggtcttttgatgggctgctgacagaggaggaatcacacagatca
tcagcagggtcgagcagatcctacagcaacttcttcactggttccctggattacaacgag
ctggcgctccgtgtgtcagagagcctgcagagccgaggtattctccaggacctgatgtct
tacacagcacagggacctgcaggtcccccaggccctcctggtccccctggcatcagcaag
gtctttgcagcctatggcaatgtcaccgcagacctcatggacttcttcagaacacatggt
gccatccaggggccacccggtgaaaagggagagagaggttatcgtggacccaaaggtgac
cctgggccgatgggcccaccaggacgacacgggcacaggggaccaaaaggagagaaggga
gagaaaggtgaacaactgtatgttggcagaagaaaaagaagagctgttggtgtttaa
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integrated database retrieval system
