Agelaius tricolor (tricolored blackbird): 139599237
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Entry
139599237 CDS
T10815
Symbol
SHOC2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
139599237 (SHOC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_14
LRR_4
LRR_LRWD1
LRR_9
LRR_5
LRR_NLRC4
Motif
Other DBs
NCBI-GeneID:
139599237
NCBI-ProteinID:
XP_071302443
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MSSNLGKEKDCKEKDPKVQSSKEREKEAKASGGFGKESKEKEPKTKGKDAKDGKKDSSST
QPGVAFSVDNTIKRPNPATGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHLLPSAVK
ELTQLTELYLYSNKLQCLPAEVGCLVNLVTLALSENSLTSLPDSLDNLKKLRMLDLRHNK
LREIPSVVYRLSSLATLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNL
ITLDVAHNQLEHLPEEIGSCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIP
KSLAKCSELDELNLENNNISTLPEGLLSSLVKLTSLTLARNCFQSYPVGGPSQFSTIYSL
NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED
VSGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTN
NQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALC
SKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtaatctaggaaaagaaaaggactgtaaagagaaggatccaaaagtccagtcg
tcaaaagaaagggagaaggaggcaaaggcctccggaggatttgggaaagagagcaaagaa
aaggagcctaagaccaaagggaaagatgccaaagatggaaagaaggactccagtagcacg
cagcctggggtagctttttcagtggacaatacgataaaaagacctaatcctgccacaggt
actcgcaaaaaatccagcaatgctgaagtgatcaaagagctcaataaatgccgagaggag
aattctatgcgcttggacttgtccaagaggtctatacacttgcttccatcagctgtcaaa
gagctaacgcagctgacagaactttatttatacagtaacaaactgcagtgcctgccagca
gaggtgggctgtctggtgaacctggtgacgctggctctgagtgaaaactcactcaccagt
ttgcctgactctctggataacttgaagaagctgcgcatgcttgacctgcggcacaacaaa
ctgcgagaaatcccctcggtggtgtacaggctcagctccctggccacgctgtacctacgc
tttaatcgcataactactgtggaaaaggatatcaaaaacttgtcaaaactcaccatgctt
agcatacgagagaacaaaatcaagcagctacctgctgaaattggtgagttgtgtaacctc
ataacgctggatgtagcgcacaatcagcttgaacatcttccagaggagattggaagctgc
acgcagatcaccaaccttgacttgcagcacaatgagctcctggacctgccagaaaccata
ggaaatctgtccagtctaagtcgtcttggcctgaggtacaataggctgtcagcaattccc
aagtctttagcaaaatgcagcgaacttgatgagctgaacttggagaacaacaacatttct
actttaccagagggtcttttatccagccttgtcaaactgactagtttaacattggccagg
aactgcttccagtcctatcctgtgggtggcccgtcccagttctccacaatctactctctc
aatatggagcacaaccgcatcaataaaatcccctttggaattttctccagagctaaagta
ttaagtaagctgaacatgaaggacaatcagctgacgtctctccccttggactttgggact
tggacaagtatggtagaactgaatttagcgactaaccagctcacaaaaatccctgaggat
gtctctgggcttgtttctcttgaggttcttatcttgtcaaacaatctcctaaagaaactt
ccccatggaattggaaatctacggaaactccgagagttagatctagaggaaaacaaactg
gaatccttgccaaatgaaatagcttacctcaaggatctgcagaaattggttctgactaac
aatcagctgaccacccttcccagaggaattggtcaccttaccaatctgacgcaccttggg
ctcggagagaaccttctcacacaccttcctgaggaaattggtacactggagaatctggaa
gaactgtatttgaatgacaaccccaatctgcacagccttccctttgagctggctctttgc
agcaaactgtcaataatgagtattgagaactgcccgctcagccaccttccacctcagatt
gttgcaggaggaccctccttcatcatccagttcctaaaaatgcagggaccatatcgtgcc
atggtctga
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