Agelaius tricolor (tricolored blackbird): 139599403
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Entry
139599403 CDS
T10815
Symbol
CCDC88A
Name
(RefSeq) girdin isoform X1
KO
K25392
girdin
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
atrc03037
]
139599403 (CCDC88A)
Cilium and associated proteins [BR:
atrc03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
139599403 (CCDC88A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HOOK_N
APG6_N
HOOK
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
139599403
NCBI-ProteinID:
XP_071302816
LinkDB
All DBs
Position
Unknown
AA seq
2081 aa
AA seq
DB search
MENEIFTPLLEQFMSSPLVTWVKTFGPLAGGNGTNLEEYVALVDGVYLNEVMLQINPKSA
NQRINKKVNNDASLRIQNLSILVKQIKTYYQETLQQLIMMSLPNVLIIGKNPFSEPGTEE
VKKLLLLLLGCAVQCQKKEEFIERIQSLDFDTRAAVAAHIQEVTHNQENVFDLQWMDVIV
LTQEYVEPLLKNMALHLKRLIDERDEHSETIIELSEERDCLRFLPHASAAQSPCGSPGMK
RTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQELEQMEAELKRLQQENMNLLSD
ARSARVYRDELDALREKAIRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKT
MLEDQLEGTRARSDKLHELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQKQ
SMDESLHLGWELEQINRTTELSEVPQKSLGHEVNELTSSRLLKLEMENQSLLKTVEELQS
AVGSVEGSSSRILKMEKENQRLSKKLEELENEISQEKQSLQNSQNQSKDLLKEKAQLEKT
LEALRENSERQIKLLEQENEHLNQTVASLRQRSQISAEARMKEIEKENKILHESIKETSS
KLNKMEFEKKQVRKELEHYKEKGERAEELENELHRLEKENELLQKKITNLKITCEKIEAL
EQENSDLETENRKLKKTLDSLKNLTFQLESLEKENSQLDEENLELRRTIESLKCTSIKVA
QLQLENKELESEKEQLKKSLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQQ
LESELQDLETENQTLQKNLEELKISSKRLEQLEKENKLLEQESSQLEKDKKQLEKENKRL
RQQAEIKDSTLEENNVKISNLERENKSLFKEIVVYKESCLRLKELEKENKELVKRATIDK
KTLVTLREDLVNEKLKTQQMNNDLEKLAHELEKIGLNKERLLHDEQSSDDSRYKLLESKL
ESTLKKSLEIKEEKIAALEARLEESTNLNQQLRQELKTVKKNYEALKQRQEEERMVQNSP
PRSGEGNQSVNKWEKENQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNN
NLQAQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSALEN
ENEAVLKEREDLKGLYEALLKDHERLEQLHERQAAEYESLIAKHGSLKAAHKNLEVEHKD
LEDRYNQLLKQKVQLEELEKVLKTEQDKMLQQSEKHETVAAEYKKLRDENERLTHTYTQL
LRENEVLQTDHKNLKTLLNNSKLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLK
GNLEEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKI
MDQYKFYEPSPPRRRGNWITLKMRKLIKSKKDGNRERLKSVTLTPTRSESSEGFLQLPHQ
DSQDSSSVGSNSLEDGQTLGTKKSSMGALKRLPFLRNRPKEKDKMKAFYRRSMSMNDLVQ
SMVLAGGQWTGSSEHLEGPDDISTGKRRKELGAMAFSTTAINFATVNSSTGFRSKQLLNN
KDTTSFEDVSPQGISDDSSTGSRVHGVQDFICADALAPPVRGIPALCRVPCQICLPFSKV
SSWTAWKFLRFLISSRPASLDSGRTSTSNSNNNASLHEVKAGAVTSQSRPQSHSSGEFSL
LQEHEAWSSSSSSPIQYLKGHTRSSPVLQHRTPESHGKPPQTGSPGSEVVTLQQFLEESN
KSNSSEMKSASEENLLDEVMRSLSESSELAGREKLRKQPAAGCGIVRSLSVRNTGDFSDG
RALKPEQLVRPSLRKAEDHYFSSSPIKFTPGAQGKPRSVKEKIQATVTQRQSRDCNPYAT
LPRASSVISTAEGSTRRTSIHDFLSKDSRPPVPVDASPADRSAPPSSSEYSALRVSSPCV
HCVPARGERGPQGEAAPTLTARPVGGHSELAKPSRMERPGGRERTLPSAGVFWDKASGSA
SGSAGSFTAPQPFLSLNTELVSNISGLPPRSTSKAADQANASAFRSVLKSQEQPCAAPKA
QGDPRAALTGDPVPAPGPGEAQSPLLVSEDNQTLWYEYGCV
NT seq
6246 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgagatcttcacaccccttctggagcagttcatgtcgagccctcttgtcacc
tgggtgaagacgttcggaccgctggctggaggaaatgggaccaacctggaggaatatgtg
gcgctggtggatggagtgtatctcaacgaagtcatgctgcaaatcaatccaaagtctgct
aatcagaggataaacaaaaaagtaaacaatgatgcatcattaaggattcaaaatttgtct
attttggtgaaacaaataaaaacttactatcaggagactttgcagcagttgatcatgatg
tctttgccaaatgtgctaataattggcaaaaatcctttttctgagccaggtactgaagaa
gtaaaaaagctcctcctgcttttgcttggttgtgcagttcagtgtcagaaaaaagaagaa
tttattgaaagaatccaaagtctggattttgataccagagcagctgttgcagcccatatt
caggaggtaactcataatcaggaaaatgtgtttgacctgcagtggatggatgtcattgtg
ctgacacaagagtatgttgagcctctcctgaaaaatatggccttgcatttaaaaaggctt
atagatgaaagagatgagcactcagagaccatcattgagctgtcggaggagcgggactgc
ctgcgcttcctgccgcacgcctcggccgcgcagtccccgtgcggctcccccggcatgaag
cgcaccgagagccggcagcacctgagcgtggagctcgccgacgccaaggccaagatcagg
aggctccggcaggagcttgaggaaaagactgagcagctgcttgactgtaaacaagagctg
gaacagatggaagctgaactgaagagacttcagcaagagaacatgaacctgctgtcggac
gcgcgctctgcccgggtgtaccgggacgagctggacgcgctgcgggagaaggcgatccgt
gtggacaagctggagagcgaagtcagccgctacaaagagaggctccatgacattgagttc
tacaaagccagggtggaggagttaaaggaagacaatcaggtgttgctagaaaccaagaca
atgctggaagatcagttagaggggacccgagctcgatcagataaactgcacgagttagaa
aaggagaatttacagctgaaagctaaactgcatgacatggagatggagcgtgatatggac
agaaagaagattgaggagctcatggaggaaaatatgaccctggaaatggctcagaaacag
agtatggatgagtctttgcatcttggctgggagctggagcagataaacaggactactgaa
ctttctgaagtgccacagaaatcactgggccatgaggtgaatgagctgacatccagcagg
ttgctgaagctggaaatggaaaaccaaagtttgctgaagactgtggaagagctgcaaagt
gcagtgggctctgtggaaggcagcagctcaaggattctgaaaatggaaaaagaaaaccaa
agacttagcaagaagcttgaagagctggagaatgaaattagccaagagaaacaaagtctc
cagaacagtcaaaaccagagtaaagatttgctgaaagaaaaagcccagcttgaaaagaca
cttgaagcccttcgagagaactccgagcgacaaattaaactcttagaacaagaaaatgaa
cacttgaatcaaactgtggcttctctaaggcagcgctcacaaatcagtgccgaggcaaga
atgaaagaaattgagaaggaaaataaaatcctccacgagtctatcaaagaaaccagcagt
aagttaaacaaaatggaatttgaaaaaaaacaagtcaggaaagagctggaacactacaaa
gagaaaggggagagagcagaagaattagagaacgagctgcatcgtctggagaaggaaaat
gagttattacagaagaaaatcaccaacctaaaaatcacttgtgagaagattgaggcctta
gaacaagagaactctgacctggagacagagaacagaaagctgaaaaaaaccttggatagc
ctgaaaaacctcacttttcaattggaatccttagaaaaggagaattcccaactggatgaa
gaaaacttagagttacggaggacaatcgaatccttgaagtgtacaagcattaaagtggca
cagttacagttagaaaataaggagctggagagtgaaaaggagcagctcaaaaaaagcctt
gaactgatgaaagcctcttttaaaaagactgaacgcttggaagtcagttaccaaggcctg
gacacggaaaaccaaaggctacagaaagccctggaaaacagcaataagaaaattcagcaa
ttagagagcgaattacaagatttagagactgaaaatcaaaccctgcaaaagaacttggaa
gagttaaaaatctccagtaagcgcctggagcagttggaaaaggagaataagttgttagaa
caagagagttctcaactggaaaaggataagaaacagctggaaaaggaaaataaaaggctt
cgacagcaagcagaaattaaagatagtaccttagaagaaaataatgtcaaaatcagtaat
ctggaaagggaaaataaatctctgtttaaagaaatagttgtgtataaggagtcctgtctg
cgcctgaaagagctggaaaaggagaacaaggaactggtgaaaagagctaccattgataag
aaaaccctggtcactttgagagaggatttggtgaatgagaaattgaagactcaacagatg
aacaatgatctggaaaaactggcccacgagcttgagaaaattggcttgaacaaggagcgt
ctcctgcacgatgagcagagcagtgatgacagtaggtacaagcttttggagtccaaatta
gaatcaacgctcaagaagtctctggaaataaaagaagaaaaaattgctgctttggaggct
cgtttggaagaatcaacaaatctaaaccagcagctgcgtcaggagctgaaaacagtgaag
aagaactatgaagctctcaagcagagacaggaagaggaaaggatggttcagaactctcct
ccaagaagtggagaaggaaatcagtctgtcaataagtgggagaaagaaaatcaggagact
actagagaattgctgaaagttaaagatagattaatcgaggtggagaggaataacgcgacg
ctgcaggcggagaagcaggcgctgaaaacgcagctcaagcagctcgagacgcagaacaac
aacctgcaggcccagatcctggccctgcagagacagactgtgtccctgcaggagcaaaac
acaactctgcaaactcagaatgccaagctgcaggttgagaactccacgctgaactcgcag
agcacgtcgctgatgaaccagaacgcgcagctgctgatccagcagtcggccctggagaac
gagaacgaggcggtgctgaaggagcgcgaggacctgaaggggctctacgaggccctgctc
aaggaccacgagcgcctggagcagctgcacgagcgccaggccgccgagtacgagtccctg
atcgccaagcacggcagcctcaaggctgcccacaagaacctggaggtggagcacaaggac
ttggaggataggtacaatcaattgctgaaacagaaagtgcagctggaagagctggagaag
gttctcaagacagagcaggacaaaatgctgcagcagagtgagaaacatgaaactgtggca
gcagaatataaaaaacttcgggatgaaaatgaaaggctcactcacacgtacactcagctc
ctgagggagaatgaagtgctacagactgaccacaagaatctgaaaacattgttgaacaat
tccaaactggagcaaacacggttggaagctgagttttccaaactcaaagaacagtaccag
caactggatattacatcgacaaagctaaataaccagtgtgagctgctcagccaactgaaa
ggaaacctggaggaggaaaacagacacctgctggatcaaatccagaccttaatgctgcag
aacagaacattactggagcagaacatggaaagcaaggatctgttccatgtagagcaaagg
cagtacattgacaaactaaacgaattgaggcggcagaaggagaagctggaggagaagata
atggatcagtacaaattttatgagccatccccaccaagaagaaggggcaactggatcacc
ctgaagatgaggaagctgatcaagtccaagaaggacgggaaccgcgagcgcctcaagtcg
gtgacgctgacgcccacgcgctccgagtccagcgagggattcctgcagctgccccaccag
gacagccaggacagctcctctgtgggctccaactccctggaggatgggcagaccctgggc
accaaaaagagtagcatgggtgcactgaaaagactgccctttttgaggaacagaccgaag
gaaaaagacaaaatgaaggccttctaccgtcgctccatgtccatgaatgacctggtgcag
tccatggtcctggcaggaggacaatggacaggtagttctgagcatctggagggtcctgat
gatatatccacgggtaaaaggaggaaggaattgggagctatggccttctccactacagct
atcaactttgccactgtcaactcctccacaggcttcagatccaagcagttgctaaataat
aaagatactacatcctttgaagatgtaagtccacaaggtattagtgatgattctagtaca
ggatcaagagttcatggagtacaggactttatctgtgcagatgctcttgctcctcctgtc
cgtggcattccagccctgtgcagggttccctgtcagatctgtttgcccttttccaaagtg
tcctcttggaccgcctggaaattccttcgctttctgatctcttccagaccagccagcctt
gatagtggcaggacatccactagcaatagcaataacaatgcttcactccatgaagtcaaa
gcaggtgcagtgaccagccagagcaggccccagagccacagcagtggggagttcagcctg
ctccaggagcacgaggcctggtccagcagcagcagcagccccatccagtacctgaagggc
cacaccaggtccagccccgtgctccagcacaggacgcccgagagtcacggcaaacccccc
cagacgggctcccctggcagtgaagtggtcaccctgcagcagttcctggaggaaagcaac
aagagtaactccagtgagatgaagtctgcaagtgaggagaaccttttagatgaagtgatg
aggagcttgtctgagtcttcggagctggcagggagggagaagctgcggaagcagccggca
gctggctgtgggatcgtgagatccctgagtgtcagaaacacgggggatttctcagatgga
cgagccctcaaaccagagcagctggtgaggcccagcctcaggaaggctgaggatcactac
ttcagtagctctcccatcaaattcacccctggcgcccaggggaagccccgctccgtgaag
gaaaagatccaagcgactgtgacccagcgacaatccagggactgcaacccctacgccacc
ttacctcgcgccagcagcgtcatttccacggcagaaggaagcacccgaaggacaagcatc
catgattttttgtctaaggacagtaggcctcccgtgcccgtggatgcatccccggctgac
aggagtgctccgcccagctccagtgagtactcggctctgcgggtgtcctctccttgtgtt
cactgtgtgcctgccaggggggagcgtggcccgcagggagaggcagctcccacgctcaca
gcacgccctgtgggaggtcactctgagcttgccaagccttccaggatggaaaggccaggt
ggtcgtgagaggactctgccgagcgcgggtgtgttctgggataaagccagcgggtctgcg
agtggcagtgcagggtccttcactgcgccccagcccttcttatccctcaacaccgagtta
gtcagcaatatcagtggattgcccccgagatccacctccaaagcagctgaccaggcaaac
gcgtcagcgtttaggtcagtgctgaagagccaggagcagccttgtgctgctccaaaggcc
cagggtgacccacgggcagctctgaccggggaccctgtccctgcccccggccccggcgag
gcccagtccccactgctggtctcagaagataaccagaccctgtggtatgagtatggctgt
gtatga
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