Agelaius tricolor (tricolored blackbird): 139599459
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Entry
139599459 CDS
T10815
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04510
Focal adhesion
atrc04512
ECM-receptor interaction
atrc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139599459 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139599459 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
139599459 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
atrc00535
]
139599459 (COL9A3)
Proteoglycans [BR:
atrc00535
]
Extracellular matrix (ECM) proteoglycans
Others
139599459 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139599459
NCBI-ProteinID:
XP_071302841
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search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NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctggaatctctgctcttgggctcctctccctgtgtcagctcttggccacagcagca
gctcagtcccttccaagaattggaccccaaggccctcctggacctccaggaccccctgga
ccatctggcaaggacggcattgatggagagccaggccctcctggtttgccaggcccacca
gggccaaaaggtgcaccagggaagcctggagctgcaggtgaagctgggttgcctggcctg
cctggagtggatggtttaacaggaactgatggcccacctggcccaaatgggcctccagga
gaccgtggtgcattaggacctgctgggccacctggaccagctggcaaaggactaccagga
cctccagggcctccaggacccagtgggctcccagggggacatggatttcggggcccttct
ggaccttttggtctgccaggattcccagggcctcctggaccacctgggcctcctggtctt
ccaggtgcccttcctgacggcggtggggaccttcagtgcccagctctgtgcccaccaggt
cccccaggccccccaggaatgccaggcttcaagggacacactggtcacaaaggggagcct
ggtgaagtaggaaaacaaggagaaaagggtaaccctggccctcccggccctccagggatt
cccggcggtgttggcctgcagggcccaagaggactgagaggcctccctggtccaatgggt
ccagctggcgacagaggtgacattggattcaggggcccacctggaatcccaggacctcca
ggcagagctggagaccaagggagcaaaggacctcagggattccgggggcccaagggtgac
actggtaaacctggaccaaaaggaaacccaggggctcgtgggctcataggagaacctggg
atgcctggcaaggacgggcgggacggagctcccggactcgatggtgagaagggtgacgca
gctcccgtgggtgctcctggagagaaggggccaaatggacttcccggtctgcctggaaga
gcaggtattaaaggctcaaagggtgaaccaggcagccctggagagatgggagaggcaggt
ccctctggagagcctggcatccctggcgacgttggcgtccctggtgagagaggtctgcca
ggacccagaggagcaactggacctcttggcctccaaggccccataggagcccgtggtgtc
cgaggtttccaggggcccaaaggtgccagtggtgagcctggcctgcctggcccgaccggg
atccgtggagagacaggagacaggggtcctcttggtgctcctggtcccaaggggaaccag
ggcattgctggagcagatggcctcccaggtgacaaaggagagctgggtccctttggacct
cctggccaaaaaggagagccaggaaaaagaggagaacttggtccaaaaggtgtccaagga
cctaatgggacagctggagcaccagggatcccaggacatccaggacccatgggtcaccag
ggggagaggggtgtccctggcatcacaggcaaacccgggcctcctggcaaagaggccagt
gaacaacatatcagagaactctgtggggaaatgataaatgagcaaattgcgctgctggct
gctaacctgaggaagcccttggctcctggggtgacgggacggcctggcccggccgggccc
ccgggccctcctgggagcacgggcagcgctggacaccctggtcctcgtgggcccccagga
tacagagggcccacaggagagcttggggaccccggacccagaggtgaccctggtgaaaag
ggagacaagggacctgtgggccaaggaattgatgggcctgatggtgaccaagggctgcag
ggaccacctggtgtgcctggaattactaaaaacggccgtgatggtgctcagggtgaaccc
gggctgccaggggatcctgggactcctggcactgttggggctcagggaactccaggaata
tgtgacacgtcagcttgcatgggagctgttgcagcatcaacttccaaaaaatcataa
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