Agelaius tricolor (tricolored blackbird): 139599802
Help
Entry
139599802 CDS
T10815
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139599802 (HTT)
04131 Membrane trafficking [BR:
atrc04131
]
139599802 (HTT)
03029 Mitochondrial biogenesis [BR:
atrc03029
]
139599802 (HTT)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139599802 (HTT)
Membrane trafficking [BR:
atrc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
139599802 (HTT)
Mitochondrial biogenesis [BR:
atrc03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
139599802 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
139599802
NCBI-ProteinID:
XP_071303534
LinkDB
All DBs
Position
Unknown
AA seq
3094 aa
AA seq
DB search
MATMEKLTKAFESLRSFQQQQGPAALPEEPLQRPKKELAATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDRPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGIAQVSVSKDEPASR
SRSGSIVELIAGGGSSCSPVLARKHKGKVLLGEEEGLDDDSETRSDVSSASFAASVKGEI
TSELASSSGVSTAGSVGSSAADATGHDIITEQPRSQHTLQSEPVELPSCDLTSAAAEGEE
EEVLSRSSSQISAVQSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEAANILQDDSESFRNSSLALQQSHLLKTMSHSRQPSDSSVDRF
TSKEDAADAGEHENKPSRVKGDIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRDV
RVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDVLNYIDHGDPQIRG
ATAILCGTIVNSILIKSRFDVEKWLINVRNSTGNLFSLIDCIPLLQKTLKDESSVTCKLA
CTAVRHCIMSLCSSSYSELGLQLIVDLLALKNSSYWLVRTELLETLAEVDFRLVNFLEGK
TESLHRGIHHYTGLLKLQERVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQGQ
ADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRAYRGYNMLPSPTDVTMENNLSRVI
AAISHALTISTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIGM
AGLVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDANQGAAKQEEPW
PALSDRALVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKGK
ERESVEQASVPMSPKKSGEASPASRQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKAT
HANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREPT
MATVCVQQLLKTLFGTNLASQYDGSSSNPSKAQGKAQRLGSSNLRPGLYHYCFMAPYTHF
TQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSISSAAKHRADKNAIHNHIRLFE
PLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQ
FRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIV
HDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRL
SRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMASV
STVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRYGENNMSTPED
HTEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLIH
IFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCHILLLVNY
TNYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALILFCDY
VCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLA
APTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATLQ
NSIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDGE
DQPPLENVVLDKDWYVSLVRSQCYIRSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSLL
APCLSLGMNEISREQKSSLFETAWRVTLDHVSSAVQNLPANHQVFQPLLPTEPSAYWKKL
SDIFGDEVMYQSMMTLCRALAQYLLLLSKLPAGLRVPPDKEGDILKFVVMSVEALSWHLV
HDQIPLSVDLQAGLDCCCLTLQQPSLWNLLSSTAHVTYACSLINCIRFIIEAVAVEPGNQ
LLSPERKNTSKPLSEGESDSNVQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSIPAFL
TPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPSGDFGTVFPEIPVEFLQEKEIFKE
FIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAITS
LVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDNI
ATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNNI
TPLREEEWGEDEEDENDVPAPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSNP
SKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPATCK
AAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIISE
YLLSNLRGVAHCVNIHNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSDE
STPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMYT
GKEKISPSRIPDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDFF
PPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRTP
VAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEELD
RRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
9285 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgacgaaggccttcgagtcgctgcgctccttccagcagcag
cagggccccgctgccctccccgaggagccgctccagagaccaaagaaagaacttgcagct
accaagaaagatcgagtgaatcattgtctaacaatatgtgaaaacatagttgctcagtct
ttaaggaattccccagaatttcagaagctgctgggcattgctatggagctctttctcctc
tgcagtgaggatgcagaatctgatgtccgaatggttgcagatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcccaggttacagttagaactctataaagagatt
aaaaagaatggtgcttcaagaagtctgcgtgctgcactctggagatttgctgagcttgcc
cacctagttcggcctcagaagtgcaggccatacctggtgaaccttttgccctgtctgaca
cggatcagtaagagacctgaggaatcggtgcaggagacgctggctgcagcaatacccaaa
atcatggcagcctttggcaattttgcaaatgacaatgagattaaggttttgttgaaggct
ttcatagctaatctcaaatccagttcccccactatccgtcgaacagcagcaggatcagca
gtgagcatctgccaacattcacgaagaacacagtatttttatgcctggttattgaatgtg
cttttaggcttgttggttcctgtagaagatgatcgtcctactcttttaattctgggtgtt
ttacttacactaaggtatctcatacctttattgcaacaacaagtaaaagataccagcctg
aaaggcagttttggtgtaactaggaaagaaacagagatttcaccttcaccagaacaactt
atacaggtttatgaactgactctgcactacacccagcatcaggaccataatgttgtgact
ggagctttagaattgctgcagcagctctttcgaactcccccccctgaactgctccatgcc
ctgactgcctgcgggggcattgctcaggtcagtgtatccaaagatgaacctgccagcagg
agccgcagcgggagcattgtggaacttatagctggaggggggtcttcatgcagccctgtt
cttgcaagaaagcataaaggtaaagtacttcttggtgaagaagaaggtttggatgatgat
tctgaaactcgatctgatgtcagctctgcatcatttgcagcttctgtgaagggtgagata
accagtgagctggcttcttcatcaggagtgtcaacagctgggtcagtggggagctcagct
gcggatgccacaggccacgacatcatcacggagcagccgcgctcgcagcacacgctgcag
tcagagcccgtggagctgcccagctgtgacctgacaagtgcagctgctgaaggggaggag
gaggaggtgctcagtcgaagctccagccagatcagtgctgtccagtcagatgccaccatg
gatttgaatgatggcacacaggcttcctcaccaattagtgatagctctcagaccactaca
gaaggtccagactctgctgtaaccccttcagacagctctgaaattgttttggagggtgct
gaaggacagtattctggaatgcaaattgggcagctgcaggatgaggaagatgaagctgca
aatattctccaagatgattcagagtccttcagaaattcttctcttgctcttcagcagtct
cacctgctgaaaaccatgagccatagcaggcagccctctgatagcagtgtggatcgattt
acatccaaagaggatgcagcagatgctggtgaacacgagaacaagccctccagggtgaag
ggggacattgggcactacactgacagagactgtgctcctctggtgcactgcgtcaggctg
ctgtcggcctccttcctgctcactggggacaaaggagctttagttcctgatagagatgtg
agagtcagtgtaaaagccttggcagtaagttgtgttggagcagctgttgcacttcaccct
gagtctttcttcagcaaactgtataaaacacctctggaggcaatgggagaagagtatgag
gagcaatacgtgtcggatgttctgaactatattgaccatggggatccccagattagagga
gctactgccattctctgtggaacaattgtcaactccattctaattaaatctcgctttgat
gtggaaaaatggctaataaatgtcagaaactcaacaggaaatctcttttccttgatagac
tgcatacctctgttacagaaaacattgaaagatgagtcctctgttacatgcaaactggct
tgtacagctgtgaggcattgcatcatgagcttatgcagtagcagttacagtgagctaggt
ttgcaattgattgttgacctccttgctctgaagaacagctcatattggcttgtaaggaca
gaacttctggaaacacttgcagaggtggattttcggttagtcaacttcttggaaggaaag
actgagagcttgcacagaggtattcatcattatactggtctattaaagcttcaggagaga
gtacttgaaaatgttgtaataagtctgcttggagatgaagatccaagagtgagacacgtg
gctgcagcttcattaatgaggcttgttccaaagctgttttataactgtgatcaaggacag
gctgacccagtggtggcagtagcacgagaccaaagcagtgtctacctgaaactcctcatg
catgaaacacagcccccatctcactttgcagtgagcactatcaccagagcatacagaggt
tacaatatgctgccaagtccaacagatgtcactatggaaaacaacctttcaagggttatt
gcagcaatttcccatgcactgacaatatccactacaagagcacttacgtttggctgctgt
gaagctttgtgtcttctctccacaacatttccagtgtgcacctggagtgtgggatggcac
tgtggtgtttcccagccaagttcttcagatgaagctcagaagggctgcaccattggtatg
gctggcttggtcctgtctctcctttcatcagcttggttcccactggacctctcagcacat
caggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaagtgcttaaag
aatccttggagtgctgaagaagatgcaaaccaaggtgctgcaaagcaggaggagccctgg
ccagctctgtcagatcgagctctggtcactttagtagaacagctcttttctcatctgctg
aaggtcatcaatatttgtgcacatgtgatggatgatgttgctcctggtccagctgtaaag
gcagcattaccttctctcacaaatccaccttctcttagtccaattcggagaaaggggaag
gagagggagtctgtggaacaggcatctgtgcccatgagtcctaagaagagtggtgaagca
agtccagcttctaggcaaactgatgctacaggacctgttccaacaagtaaatcatcttca
gtaggaagcttttatcatcttccatcatacctgaagttatatgatgtcttgaaagcaacc
catgctaattacaaggttactttggatctccagaacacaaatgagaagtttggatgtttc
ttacgctctgccttagatgtcctctctcaaatcttggaacttgctactcttcaggacatt
ggaaagtgtgtagaagaaattttgggatatctaaaatcatgtttcaacagagagccaacg
atggcaacagtgtgtgtacagcagttattgaaaacattgtttgggacaaatctggcttct
cagtacgatggctcctcttcaaaccccagcaaagctcaaggcaaagctcagcgcttgggt
tcctccaacctgaggcctggcctctaccactattgcttcatggcaccctacacacacttc
acacaggcccttgctgatgccagtctgaggaacatggtgcaggctgagcaggagcacgat
gcttcaggatggtttgatgtgctgcagaaagtttctacacagctgaaaactagcatttcc
agtgcagcaaagcatcgtgctgataagaatgctattcacaatcacattcgtttatttgaa
ccccttgtcataaaagcattgaaacaatacacaacaacaacgtcggtacagctgcagaga
caagttctagacttgcttgctcaactggttcagctgagagttaactactgtcttctggat
tcagatcaggtgtttattggatttgtgcttaagcagtttgaatacattgaagtaggacag
ttcagggagtctgaagcaattattcctaatatcttctttttcttggtgttgctgtcttat
gagcgatatcattccaaacaaataattggaattcccaagatcattcagctgtgtgatggt
atcatggccagtgggaggaaagctgttacacatgcaataccagctctgcaacccattgtt
catgatctctttgtgttaagaggaacaaataaagctgatgctggaaaagagctggaaact
cagaaggaggttgtagtgtcaatgctgctgagacttatccagtaccatcaggtgctagaa
atgttcatcttggtattgcaacagtgtcataaagaaaatgaagacaaatggaagagattg
tctcggcaaatagctgacatcattctcccaatgcttgcaaaacaacagatgcatatagac
tctcatgatgctttgggagtattgaacactttgtttgaaattttggccccttcatccctt
cgccctgtggacatgcttttaaggagcatgtttgttactcctaaaacaatggcatcagtg
agcactgtccaactttggatttctggaattttagctatcctcagagttctgatttcacag
tcaacagaagacatcgtcctatcccgtatacaagagctttccttctcaccatatttgatt
tcatgtcaagcaatcaacaggctgagatatggagaaaataacatgtccacaccagaggat
cacactgaggtcaaacaggtgaaatacccacctgaagagacattttccagattcttatta
caactggttggcattctactggaagatattgttaccaagcaattaaaagtggacatgaat
gaacagcaacatactttctactgccaggagctgggcacactgcttatgtgcttaatacac
atcttcaaatcagggatgtttagaagaatcacagctgcagccaccagactttttacagga
gatggatctgatggtagtttctacacacttgaaagtctgagtgaccttgttcagtccatg
attcccactcatccttctttagttctcctctggtgtcacattttgcttcttgtcaattat
accaactacaactggtggtcagaagtgcatcaaaccccaaagagacacagcctttctact
acgaaattgctgagccctcacatatctggagacagtgatgaatctgacctggaatccaag
cgtggcatgtgcaatcgtgagatagtgagaagaggagcactcattctcttctgtgactat
gtttgtcaaaacctacatgattcagaacacctgacctggcttattgtgaatcatgttcaa
gacttgattaatctgtcccatgagcctccagtacaagattttatcagtgctgttcacagg
aattcagcagcctctggtctcttcatccaggccattcagtcacgctgtgagaatcttgca
gctcccaccaccctgaagaagaccttgcagtgtttggagggaatccacctgagccagtct
ggggcggtgctgacgctgtacgtggacaagctgctgtgcacgcccttccgcgtgctggcg
cgcatggtggacaccctggcctgccgccgcgtggagatgctgctggcagcaactctgcag
aacagcattgctcagttaccagttgaagaactggatagaattcaggagtaccttcaaaac
agtggattagcagcaagacaccaaagactctactcactcctggataggtttcgtctcatg
gtagctccagacacaaccagcccctcacctctggtcacctcacacccactggatggggaa
gatcaaccacctctagagaatgtagttctagacaaagactggtacgtgtccctagtgcgg
tcacagtgttacatcaggtctgactcagcacttctggaaggagcagagctggtaaatagg
attcctcagcctgacctgaactcattcatgaccagcaaggagttcaaccttagcttgtta
gcaccttgtttaagccttggcatgaatgagatctcaagggagcagaagagcagcctcttt
gaaacagcttggagagtaactctggaccatgtgtcttctgctgtacaaaaccttccagcc
aaccaccaggtttttcagccactattgccaactgagccatcagcctactggaaaaaacta
agcgacatctttggagatgaggtgatgtatcagtctatgatgacactttgtcgtgcactg
gctcagtatttgttgttactctcaaaactaccagctggtctccgtgttcctcctgacaaa
gagggtgacatcctgaaattcgtagtgatgtcagtagaggcactatcatggcatttagtg
catgaccagattccattaagtgtagatcttcaagctggtctggattgttgctgtctgaca
ctacagcagcctagtctctggaatctgctgtcttctacagctcatgtgacatatgcttgc
tccttaattaactgcattagattcatcatagaagcagttgctgtggaacctggtaatcaa
cttctgagtcctgaaagaaagaatacttcaaaacctttaagtgagggagaaagtgattca
aatgtacagaaaacaaaacacattattgcagcatgtgaaatgatagctgagatggtggaa
tgcttacagactgtcttgtcactggggcacaaaagaaacagcagcatccctgcatttctc
actcctgtcctcaagaacatcatcatcagtttagcaaggctgcctctagtgaacagctac
accagagtacctcccttggtctggaaattaggctggtcaccaaagccttcaggtgatttt
ggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaggaaatctttaaggag
ttcatctatcgcattaatacacttgggtggatcagccgtactcagtttgaagagacttgg
gctactttgcttggtgtgctcgtaactcagcccattgtaatggaccaggaggagaaccag
caagaggaagatacagagaggacccagatcaatgttctggcagtgcaagccataacctcc
ctggtgctgagtgcaatgaccatccctgttgcaggcaatcctgcagtcagctgcttggag
cagcagcctcgcaacaaagctttgaaagctctggacacaaggtttgggaggaagctaagt
gttatcaggggaattgttgaacaggaaatccaggcaatggtgtctaagagagataacatt
gctactcatcacttataccaagcttgggaccctgttccatcactttctcctgctactaca
ggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaacgagaaatagga
gatatggattataaattgggacaggtctctatccactccatatggttaggaaataatatc
actccactgagagaagaagagtggggtgaggatgaagaagatgagaacgatgtacctgct
ccttcctcaccacctacctctcctatcaacaccaggaaacaccgggctggtgtagatatc
cactcttgttctcagttcttgcttgagctgtacagtcagtggatattgccatccaacccc
agcaagagaacaccagtgattctgatcagtgaagtggtgcgatcacttctggcagtgtca
gacttatttacagaaaggaatcagtttgagatgatgtacacaacactgacagagttgaga
aaggtgcatccctcagaagatgagattcttgtacagtatttgataccagctacttgtaaa
gctgctgctgttcttggaatggataaggctgtggctgaaccagtgagtcgactgctggaa
tcaaccctgaggagcacccacatgccaagtcggattggagccctgcatggaatcctttat
atccttgagtgtgacttgctggatgaaacagcaaagcagctcattccaattatcagcgag
tatctgctctccaatttgagaggagtagcacattgtgtgaatatccataaccaagagcac
attttggtcatgtgtgcagctgctttctatttgattgagaattacccacttgatgtaggg
cctgaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagtgatgaa
tcaacaccatccattatttatcactgtgtcctgagaggattggagcgactcctcctttca
gagcagctttccaggctggacagtgagtccctggttaagctgagtgttgacagggtgaat
gtgcagagcccccacagagcaatggcagccctgggattgatgctgacttgcatgtacaca
ggaaaggaaaaaatcagccccagccgtatcccagatgcaaatcctggtgctcctgacagt
gaatctgtgattgttgctatggaacgagtatctgtcctttttgataggatcaggaaggga
tttccctttgaagctcgagtagtggctcggattcttccgcagttccttgatgattttttc
cccccacaagatgtaatgaacaaagtcattggggaatttctgtccaatcagcagccatac
ccacaattcatggcaacagtagtttataaggtgttccagacactgcatagcactggacaa
tcctccatggtccgtgactgggtgatgctctctctctccaatttcacacaaagaacacct
gtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttccaccagtcaatgg
atttcagcaattcttccacatattatcagcagaatggggaaatcagagcaggtggatgtt
aacatcttctgtttggtggccatagacttctaccggcaccagatcgatgaggagttggat
cggagagccttccagtcagtgtttgaggtggtggcatctccaggaaccccataccaccgc
ctcctgacctgtttgcaaaatgtccacaaggtcacagcatgctga
DBGET
integrated database retrieval system
