Agelaius tricolor (tricolored blackbird): 139599880
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Entry
139599880 CDS
T10815
Symbol
FDFT1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc00100
Steroid biosynthesis
atrc01100
Metabolic pathways
Module
atrc_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
139599880 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
atrc01006
]
139599880 (FDFT1)
Enzymes [BR:
atrc01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
139599880 (FDFT1)
Prenyltransferases [BR:
atrc01006
]
Terpene biosynthesis
Squalene/phytoene synthase
139599880 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
HAUS4
Motif
Other DBs
NCBI-GeneID:
139599880
NCBI-ProteinID:
XP_071303672
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MELLRKWLGHPEDIYNLLRFKMGGYRAVMPRMDTDSLGCGLRTCYRYLNQTSRSFAAVIQ
ALDGELRHAVCIFYLVLRALDTVEDDMSIPLDVKVPMLHEFHSHLYQPDWKYTESKERDR
QVLEDFPTISMEFRKLSKVYQDVISDICHKMGVGMAEFLEKKVDSQHEWDKYCHYVAGLV
GIGLSRLFSASELEDSIVGQDTDLANSMGLFLQKTNIIRDYLEDQMEGREFWPREVWSRY
AKKLSDLAKPENIDAAVQCLNELITNALHHVPDVLTYLSRLKNQSVFNFCAIPQVMAIAT
LAACYNNQQVFKGVVKIRKGQAVTLMMDATNIQAVKAIMYQYVEEIYQKIPSTDPSCHKT
QQAIAAIRAASLPGGPMASRHHYSPIYLSCAMLLAALSWQYLSTLSKATEEYVQAGDN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggagctgctacggaaatggctgggccaccccgaggacatctacaacctgctccgcttc
aagatgggcggctaccgcgccgtcatgccgcggatggacacggactcgctgggatgtggc
ctccgaacctgctaccgatacctcaaccagaccagccgcagcttcgccgccgtcatccag
gctctggatggagagctgcgccatgcagtctgcatcttctacctggttctccgtgccctg
gacactgtagaggatgacatgagcatccctttggatgtcaaggtcccgatgctgcacgag
ttccactcccacctgtaccagccagactggaagtacacagagagcaaggagagggacagg
caggtgctggaggacttcccaacgatctccatggagttcagaaaactgtccaaggtctac
caggatgtgatttcagatatttgtcacaagatgggtgttgggatggcagagttcttggag
aaaaaggtggattctcagcatgagtgggacaagtattgtcactacgttgctgggctggtg
gggattggcctttcccgtctcttctctgcatcagagctggaagattccatcgtggggcag
gacacagacctggcaaactccatgggcctcttcctgcagaaaaccaacatcatccgtgac
tacctggaggaccagatggagggaagggagttctggcccagagaggtttggagcagatat
gccaagaagctctcagaccttgccaagccagagaacatcgacgcggccgtgcagtgcctc
aatgagctcatcaccaacgccctccaccacgtccccgacgtcctcacctacctgtcccgc
ctcaaaaaccaaagtgtcttcaacttctgtgctatcccccaggtgatggccattgccacg
ctggctgcctgctacaacaaccagcaggtgttcaagggggtggtgaagatccgcaagggc
caggccgtcaccctcatgatggatgccaccaacatccaagctgtcaaagccatcatgtac
cagtatgtggaagagatctaccagaagatcccgagcacggacccctcgtgccacaagacg
cagcaggcgatcgccgccatccgcgccgccagcctgcccggcggccccatggcctcccgc
caccactactcccccatctacctgtcctgtgccatgctgctggcagccctgagctggcag
tacctcagcaccctctccaaggccaccgaggagtacgtgcaggcaggggacaactga
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