Agelaius tricolor (tricolored blackbird): 139600001
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Entry
139600001 CDS
T10815
Symbol
RABGEF1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04137
Mitophagy - animal
atrc04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
139600001 (RABGEF1)
04137 Mitophagy - animal
139600001 (RABGEF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atrc04131
]
139600001 (RABGEF1)
Membrane trafficking [BR:
atrc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
139600001 (RABGEF1)
Protein recycling
Other Rab GTPase associated proteins
139600001 (RABGEF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Motif
Other DBs
NCBI-GeneID:
139600001
NCBI-ProteinID:
XP_071303890
LinkDB
All DBs
Position
Unknown
AA seq
539 aa
AA seq
DB search
MNLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER
LQREEEEAYASSQSTQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFTASSRAGAKKAAEEK
TPKQGQLGRERNADNILRDLKEIFTPSWELASPSEALAGKLKAEIQEAKAPSPSIHRQAS
IETDRVSKEFIEFIRTYQKPGQDIYKQCKLFLDTMSHKRDLSIEEQSECAQDFYQNVADR
LQTRWKVPPEKVEKAMDEVEKYIMTRQYKYVFCPETTDDEKKDLAVQKRIRALHWVTPQM
LCVPVSEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASA
DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ
SLNLSQEDFDRFMTGQTSPKKQESDSFSPDVCLGVKQMCKSLDLLSQLNERQERIVSEAK
KLEKDLIDWTDGITKEVQDIVEKYPLEIKAKSQALAAIDSENVENDKLPPPLQPQVYAG
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgaagtcggagcgcagggggatccacgtggaccagtcggagctgctgtgcaag
aagggctgtggttactatggcaatcctgcctggcagggcttctgctccaagtgctggagg
gaggagtaccacaaggccaggcagaagcagattcaagaggattgggagctggcagagcgg
ctccagcgtgaggaggaagaggcctatgccagcagccagagcacccagggggcacagtcc
ctgaccttctccaagtttgaggagaagaaaaccaatgagaaaacaagaaaggtcactact
gtgaagaagttcttcactgcttcctccagagcaggagctaagaaggcagctgaagagaaa
acccctaagcaaggacagcttgggagggagagaaatgctgataacattctcagggatttg
aaggagatttttactccctcctgggaactggcttccccttcagaagcgttggctggcaag
ctgaaagcagagatccaggaggccaaagctcccagcccttccatccacaggcaggccagc
atcgagacagacagagtgtccaaggagttcatagaattcatcaggacctaccagaagcct
ggccaggatatctacaagcagtgcaaactctttctggacaccatgagtcataaaagggat
ttaagcattgaggaacaatctgaatgtgcccaggatttctaccaaaatgtggcagacagg
ctgcagacacgttggaaagtgccccctgagaaagtggagaaggcaatggatgaggttgag
aaatacatcatgactcgccagtataaatatgttttttgccctgagacaactgatgatgag
aagaaagacctggctgtccaaaagaggatcagggctctgcactgggtgaccccccagatg
ctctgtgttcctgtcagtgaggagatcccagaggtctctgacatggttgtgaaggccatt
acagacatcatcgagatggactccaagcgtgtccctcgggacaaactggcctgcatcacc
aaatgcagcaagcacatcttcaatgccatcaaaatcaccaaaaacgagccagcctctgct
gatgatttcctgcccaccctgatttacatcgtgctcaaggggaaccccccacgcctgcag
tccaacatccagtacatcactcgcttctgcaaccccagcaggctgatgactggggaggat
ggatattacttcaccaacctgtgctgtgctgtggccttcattgaaaaactggatgctcag
tccttaaacctgagccaggaagattttgatcgtttcatgactggccagacctccccaaaa
aagcaggaatctgacagtttctcccctgatgtgtgcctgggggtgaagcagatgtgcaaa
agcttagacctcctctctcagttgaacgagagacaggaaagaattgtcagtgaagccaag
aaactggagaaagacctcattgattggactgatggcatcaccaaggaggtgcaggatatt
gtggagaaatatcccttggaaatcaaagctaaaagccaagccttagcagccattgactct
gaaaatgtggagaatgacaagctgcccccaccactgcagcctcaggtgtatgcagggtaa
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