Agelaius tricolor (tricolored blackbird): 139600014
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Entry
139600014 CDS
T10815
Symbol
SUPT4H1
Name
(RefSeq) transcription elongation factor SPT4
KO
K15171
transcription elongation factor SPT4
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
139600014 (SUPT4H1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atrc03021
]
139600014 (SUPT4H1)
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139600014 (SUPT4H1)
Transcription machinery [BR:
atrc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
139600014 (SUPT4H1)
RNA polymerase I system
139600014 (SUPT4H1)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
139600014 (SUPT4H1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spt4
Motif
Other DBs
NCBI-GeneID:
139600014
NCBI-ProteinID:
XP_071303951
LinkDB
All DBs
Position
Unknown
AA seq
120 aa
AA seq
DB search
MAAISLETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCETYLQMKGNREMVYDCTSSSF
DGIITMMSPEDSWVSKWQRISTFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT
NT seq
363 nt
NT seq
+upstream
nt +downstream
nt
atggccgccatctcgctggagaccgtccccaaggacctgcggcacctgcgggcctgcctg
ctctgctccctcgtcaagaccatcgaccagttcgagtatgatggctgtgacaactgtgag
acgtatctgcagatgaagggcaaccgcgagatggtctatgactgcaccagctcctccttt
gatgggatcatcaccatgatgagccctgaggacagctgggtctccaagtggcagcggatc
agtaccttcaagccaggtgtctatgcagtgtctgtgaccggccgcctgccccaagggatc
gtccgagagctgaagagccgtggcgtggcctacaagtctcgggacacagccataaaaacc
tga
Agelaius tricolor (tricolored blackbird): 139587044
Help
Entry
139587044 CDS
T10815
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
139587044 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atrc03021
]
139587044 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139587044 (SUPT5H)
Transcription machinery [BR:
atrc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
139587044 (SUPT5H)
RNA polymerase I system
139587044 (SUPT5H)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
139587044 (SUPT5H)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
KOW6_SPT5
Spt5-NGN
KOWx_SPT5
Spt5_N
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
139587044
NCBI-ProteinID:
XP_071276983
LinkDB
All DBs
Position
Unknown
AA seq
1080 aa
AA seq
DB search
MSDSEESNFSEEESERSSDEGDDNEPEEQRGGGSGKEEPEEEEEEEEEEEEEEYDEEEEE
EEDDDRPAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGAR
RLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVK
CKIGEERATAIALMRKFIAYQYTETPLQIKSVVAPEHVRGYLYVEAYKQTHVKQAIEGVG
NLRLGYWNQQMVPIKEMTDVLKVVKEVTNLKPKAWVRLKRGIYKDDIAQVDYVEPSQNQI
SLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEG
NRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPG
DNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFRMGDHVKVIAG
RFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLD
PQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVI
DGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFAMCGFA
PMSPRISSPMHPSGAGQRGGFGAGGLSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDAT
ESTARVELHSTCQTISVDRQRLTTVGSRRPGGLTSAYGRTPMYGSQTPMYGSGSRTPMYG
SQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFEDEPTPSP
QGYGGTPNPQTPGYPDPASPQVSQPYNPQTPGTPAMYNTEQFSPYAVPSPQGSYQPSPSP
QSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTP
GSGIEAGAGGDWVTTDIQVKVRDSYLDSAAVGQTGVIRSVTGGMCSVYLKDSEKVVSVSS
EHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLEEQLKILNLRFLGKLLEA
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggagagcaacttctccgaggaggagagcgagcgcagcagcgacgag
ggcgacgacaacgagcccgaggagcagcgcggggggggcagcggcaaggaggagcccgag
gaggaggaggaggaggaggaagaggaggaggaggaggaatacgatgaggaggaggaggag
gaggaagacgacgaccggccggccaagaagccgaggcacgggggcttcatcctggacgag
gctgatgttgacgatgagtacgaggatgaagatcagtgggaggatggggccgaggacatc
ctggagaaagcctccaacatcgacaacgtggtgctggacgaggatcgctcgggggcgcgc
cgcctgcagaacctctggagggaccagcgtgaggaggagctgggcgagtactacatgaag
aaatacgccaagtcctcggtgggcgagacagtttacggcggctccgacgagctctcggac
gacatcacccagcagcagctgctgcccggcgtcaaggaccccaatctctggacagtcaag
tgcaagatcggggaggagcgcgccacggccatcgccctcatgcgcaaattcatcgcctac
cagtacacggagacgcccctgcagatcaagtcggtggtggcacctgagcacgtcaggggt
tacctgtacgtggaggcctacaagcagacgcacgtcaagcaggccatcgagggcgtgggc
aacctgcgcctgggctactggaaccagcagatggtgcccatcaaggagatgacggacgtg
ctcaaggtggtcaaggaggtcaccaacctcaaacccaaggcctgggtgcgcctcaagagg
ggcatctacaaggacgacatcgcccaggtggattacgtggagcccagccagaaccagatc
tccctgaagatgatccccaggatcgacttcgaccgcatcaaagccaggatgagcctgaag
gactggttcgccaagcgcaagaagttcaagcggccgccccagcgcctcttcgacgccgag
aaaatccgatccctgggcggggacgtggcctcggacggcgacttcctcatcttcgagggc
aaccgctacagccgcaagggcttcctgttcaagagcttcgccatgtcggccgtgatcacg
gagggcgtcaagcccaccctgtccgagctggagaaattcgaggaccaacccgagggcatc
gacctggaggtggtgaccgagagcacagggaaggagcgcgagcacaacttccagcccggg
gacaacgtggaggtgtgcgagggggagctcatcaacctgcagggcaagatcctcagcgtg
gacggcaacaagatcaccatcatgcccaagcacgaggacctcaaggacatgctggagttc
ccggcgcaggagctgcgcaagtacttcaggatgggcgaccacgtgaaggtgatagcaggg
aggttcgagggggacaccgggctcatcgtcagggtggaggagaacttcgtgatcctgttc
tcggacctgaccatgcacgagctgaaggtgctgccccgggacctgcagctctgctccgag
acggcctcgggcgtggacgtgggggggcagcacgagtggggggagctggtgcagctggac
ccccaaaccgtgggggtgatcgtgcgcctggagcgggagacattccaggtgctgaacatg
tacggcaaggtggtgaccgtgcgccaccaggcggtgacgcgcaagaaggacaatcgcttc
gcggtggcgctggactcggagcagaacaacatccacgtcaaggacatcgtcaaagtcatc
gacggcccccattccggccgcgagggcgagatccggcacctgttccgcggcttcgccttc
ctgcactgcaagaagctggtggagaacgggggcatgttcgtgtgcaagacgcggcacctg
gtcctggcggggggctccaagcctcgggacgtcaccaacttcgccatgtgcggcttcgcg
cccatgtccccccgcatcagcagccccatgcaccccagcggggccgggcagaggggcgga
ttcggggccggggggctgagccggggccgcggccggcgcgacaacgacctcatcgggcag
acggtgcgcatctcccaggggccctacaaagggtacatcggggtggtgaaggacgccacg
gagtcgacggcgcgcgtggagctgcactcgacgtgccagaccatctctgtggacaggcag
agactgaccacagtgggctcgcggcgccccgggggcctcacctcggcctacgggaggacc
ccgatgtacggatcccaaacccccatgtacggctcggggtccagaacgcccatgtacggc
tcacagacccctctgcacgatgggagccgcaccccccactatggctcgcagacccccctg
cacgacgggagccggaccccggcccagagcggggcctgggaccccaacaaccccaacacg
cccagcagggcggacgaggatttcgagtacggcttcgaggacgagcccacgccgtcgccc
cagggctacgggggcacccccaacccgcagaccccggggtaccccgaccccgcgtcgccc
caagtcagccagccctacaacccccagacccccggaacgcccgccatgtacaacacggag
caattctcgccctacgccgtcccctccccccagggctcctaccagcccagcccctccccc
cagagctaccaccaggtggcgccgagcccggtcgggtaccagaacacgcactcacctgcg
agctaccaccccacgccctcacctatggcctaccaggccagccccagccccagccccgtg
ggttacagccccatgacccccggcgccccctccccgggcgggtacaacccccacacgccc
ggctcgggcatcgaggcgggcgcgggcggggactgggtgaccacggacatccaggtgaag
gtcagggactcgtacctggacagcgccgccgtgggccagaccggcgtcatccgcagcgtc
acgggcgggatgtgctcggtgtacctgaaggacagcgagaaggtggtcagcgtgtccagc
gagcacctggagcccgtcacgcccaccaagagcaacaaggtcaaggtgatcctgggcgag
gaccgcgaggccaccgggatcctgctgagcatcgacggcgaggacggcatcgtgcgcatg
gacctggaggagcagctcaagatcctcaacctgcgcttcctgggcaagctgctcgaggcc
tga
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integrated database retrieval system
