Agelaius tricolor (tricolored blackbird): 139600190
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Entry
139600190 CDS
T10815
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03410
Base excision repair
Brite
Enzymes [BR:
atrc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
139600190 (LIG3)
DNA repair and recombination proteins [BR:
atrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
139600190 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
139600190
NCBI-ProteinID:
XP_071304278
LinkDB
All DBs
Position
Unknown
AA seq
978 aa
AA seq
DB search
MPTGSRTLSHAARALGRGTALFCPRPQLPVPRPLSRRAGARRGCWCQLLFQPVPVPSPQP
AFPLSLLLGSWLRSACAAAGDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNP
FTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEEKETINKYISEANS
KTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFSAKPKSSEDSPAKCAQKPSLSAARCD
PQHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKMLLPGVI
KIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKSLLTIQ
EVDEFLMQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDP
NAYEAFKASRNLQDVVERVLQNQQEAEKVPGLKKTLSVQASLMTPVQPMLAEACKSIEYA
MKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGQSM
ILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERRK
FLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDIKGNYEPGKRHWLK
VKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGGHDD
ATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAH
TADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVTAGEEDESTAGSSGE
NDGNSRSSTPHSSIKSPPSKSPAKAQKAEDSKGVIGSPQKSEERRGEKRKASEMEDNGKK
QPLLDIFTGVKLYLAPSVPDFARIRRYFIAFDGDLVEEFDTASATHVLGDIDDNPGAQRV
TPRWIWECIRKRRLVAPC
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcagcaggacgctgtcacacgctgcccgcgctctcggcaggggcacagcg
ctgttctgccctcgcccgcagctccccgtgcccaggccgttgtcccgccgtgccggagcc
aggcgcgggtgctggtgccagctgctgttccagcccgtccctgtgccatccccgcagccc
gcgtttcccctgtccctgctgttgggcagctggctgcgctcggcctgcgcggctgccggg
gacatggcggagcagcggtactgcgtggactatgccaaacgaggcaccgcgggctgcaag
aagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaagattgttccaaatcct
ttcaccgagtctggaggggacatgaaggagtggtaccatgtcaagtgcatctttgagaag
ctggataaggcccgggccaccactaagaaaattgaagacatcacagacttggaagggtgg
gaagagctgcaggatgaggagaaagaaacaatcaacaagtacatctcagaagccaattcc
aagactggaggtaccccaaagaaaaaggtgatagtgcaggcaaaactcactgccacagga
cagctgaccacaaaagatccaccaaagaaattctctggattctctgccaagccaaagagt
tcagaagattctcctgcaaagtgtgcccagaagccgagcctgtctgcagccaggtgtgac
ccccagcacaaggactgcctgctgcgcgagttccgcaagctctgcgccatggtggctgag
aaacccagctacaatgtcaaaacccagatcatccaggacttcctcaggaagggatctgca
ggagatggttttcatggtgatgtatacctgaccattaagatgctgttgccaggtgtcatt
aaaatagtttacaacttgaatgataagcagattgtaaagctgttcagcaggatttttaac
tgcaaccaggaagaaatggtccgggacctggagcagggagatgtttctgagaccatacgg
atcttcttcgagcagagcaagacctgtcccccagcagccaagagcctcctgaccatccag
gaggtggatgagttcctcatgcagctgtccaagctcaccaaggaggatgaccagcagagt
gtcctgcagcagatcagtcgcaggtgtacaggcaacgacctgaagtgcatcatcaggcta
attaagcatgacttgaaaatgaatgctggagcaaagcacgtgttggacgctctggatccc
aacgcctacgaggcgttcaaggcctcgaggaacctgcaggacgtggtggagagggtgctg
cagaaccagcaggaggcagagaaggtgccagggctgaagaagaccctgagtgtgcaggcc
tcactcatgaccccagtgcagcccatgctggctgaggcctgcaagtccatcgagtatgcc
atgaagaagtgtcccaacgggatgtacgccgagatcaagtacgacggcgagcgcgtgcag
gtgcacaagaatggggatcacttcagctacttcagcaggagtctcaagcctgtgctcccc
cacaaagtagcccattttaaggatttcatcccccaggctttccctggtgggcaaagtatg
attctggattcagaagttctcctgattgacaataaaactggcaagccacttccttttggg
actcttggtgtgcacaagaaagctgctttccaggatgccaacgtttgcctgtttgtgttt
gactgcatctacttcaatgacatcagcctgatggacaggcccctctgtgaacggcgcaag
ttcctccacgacaacatggtggagatccccaacaggatcctgttctcagagatgaaacat
gtcacaaaagcttcagatctggcagacatgatcacccgggtcatccgcgaggggctggaa
gggctggtgctgaaggacataaagggtaattatgagccagggaaacgccactggctgaag
gtgaagaaggattatctcaacgagggggcaatggctgacactgctgacctggtggtgctg
ggggctttctatggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggctgc
tatgaccccaagagtgagaagtggtgcacggtgaccaagtgctctggtggccatgatgac
gccaccctggcacgtctgcagacagagctggacatggtgaagatcagcaaggatcctagt
aaaattccaaggtggctaaaaattaacaaaatctactacccagacttcattgtcccagat
ccaaagaaagccccggtgtgggagatcacgggggccgagttctccaaggccgaggcgcac
acggctgacgggatctccatccgcttcccgcgctgcacccgcatccgggatgacaaggac
tggcagacagccaccaacctgcagcagctcaaggagctgtaccagctctccaaggagaag
gctgatttcagtgttacagctggggaggaagatgagtccacagctggcagcagtggagag
aatgatgggaattccaggtcttccacccctcacagcagtattaagagtcccccaagcaag
tcacctgcaaaagcccagaaggcagaagacagcaaaggagtcattggatcccctcaaaaa
tccgaggagagacgaggggagaagagaaaagcatctgagatggaggacaatggaaaaaag
cagcccctgctggacattttcacgggggtgaagctgtacctggcgccctcggtgccggac
tttgcgcggatccgccgctacttcatcgccttcgacggggacctggtggaggagtttgac
acagcctcggccacccacgtgcttggggacattgatgacaaccccggggcgcagcgggtg
actcccaggtggatctgggagtgcatccggaagcgccggctggtggcgccgtgctag
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