Agelaius tricolor (tricolored blackbird): 139600419
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Entry
139600419 CDS
T10815
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atrc03021
]
139600419 (CHD1)
03036 Chromosome and associated proteins [BR:
atrc03036
]
139600419 (CHD1)
Transcription machinery [BR:
atrc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
139600419 (CHD1)
Chromosome and associated proteins [BR:
atrc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
139600419 (CHD1)
SLIK complex
139600419 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DUF7855_C
Motif
Other DBs
NCBI-GeneID:
139600419
NCBI-ProteinID:
XP_071304677
LinkDB
All DBs
Position
Unknown
AA seq
1809 aa
AA seq
DB search
MNGHSDEESVGNSSGESSRSDDDSGSASASGSGSSSGSSSDGSSSQSGSSDSDSGSESGT
QSESESDTSREKKQIQSKPPKVDGSEFWKSSPSVLAVQRSAVLKKQQQQKAASSDSVSEE
DSSSSDDSADDSSSETKKKTHKDEDWQMSGSGSMSGTGSDSESEEDREKSSCEESESDYE
PKNKVKSRKPQTRIKPKSGKKNAGPKKRQLDSSEDDDEEEDDDDYDKRGSRRQATVNISY
KEAEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGAATTIYAVEADGD
PNAGFEKSKEPAEVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRW
LKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECS
WEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELR
DYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSF
LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFSSWEDFEEEHGKGRECGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ
KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH
LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVA
NFSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQISF
NGSEGRRSRSRRYSGSDSDSVSERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLL
IGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEA
QRLAGAGNSKRRKTRTKKNKVLKAAKLKEEIKSDSSPQPSEKSDEDDDENNKDEIVSVKH
LHKKFKAEKENEEKPEPDTGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDIKE
KRENKVKESTQKEKEVKEEKVNEIKSENKEKTKKIPLLDTPVHITASSEPVPISEESEEL
DQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPE
QIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSHVNTHVIRNPDV
ERLKENTNHDDSSRDSYSSDRHLSQHHDHHKDRHQGDAYKKNDSRKRPYSAFSNGKDHRD
WEHYKQDSRYYSDSKHRKLDDYRSRDHRSSLEGSLKDSRVHLDHRSHSDHRIHSDHRSSS
EYSHHKSPRDYRYHSDWQMDHRASGSAPRSPLDQRSPYDSRSPLGHRSPFEHSSDHKNTP
EHTWSSRKT
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgtaggaaacagtagtggagagtcaagccgatca
gatgatgattctgggtcagcatcagcttctggatctggttcaagctctggaagcagtagt
gacggaagcagcagccagtcaggcagcagtgactctgactctggttcagagtcagggact
cagtcagaatcagagtctgacacatctagagagaagaaacaaattcaatctaaaccacca
aaagttgacggatctgagttttggaagtctagtccaagtgtacttgccgtgcaaagatca
gcagtactcaagaagcagcaacaacaaaaggcagcctcatcagacagtgtttcagaagag
gactcctcaagtagtgacgattcagcagatgactcatccagtgaaaccaagaaaaaaaca
cataaagatgaagactggcaaatgtcaggatcagggtcaatgtcgggaacaggttcagat
tctgaatcggaggaagacagggagaaaagcagctgtgaggagagtgaatctgactatgag
ccaaaaaacaaggtcaaaagccgtaaacctcaaaccagaattaagccaaaaagtgggaaa
aagaatgcaggaccaaaaaagaggcaacttgattcttcagaggatgatgatgaggaggag
gatgatgatgattatgataagaggggatctcgtcgtcaggcaaccgtcaacattagttac
aaggaagctgaagaaaccaagacagattctgatgatttactagaagtttgtggagaagat
gttccacaacctgaagaagatgaatttgaaactatagagaaatttatggatagtcgagtt
ggccgtaaaggagccacaggtgctgcaaccacaatatatgcagttgaggccgatggtgat
ccaaatgctgggtttgaaaaatcaaaggagccggcagaagtacagtatcttattaaatgg
aaaggttggtcacacatccacaacacttgggaaactgaggaaacactgaagcaacaaaat
gttaaaggaatgaagaaactggacaattacaagaaaaaggatcaggaaacaaaacgatgg
ctgaaaaacgcttctccagaagatgtggaatattacaactgccagcaggagcttacagat
gatctacataaacaataccagatagtggaaagaataattgctcattcaaatcagaaatca
gctgctggttatccagactactattgtaagtggcagggtctgccttattctgaatgtagc
tgggaagatggagctctcattgccaaaaagtttcaggcacgcattgatgagtacttcagc
agaaatcaatccaagaccactccctttaaagattgcaaggttctaaaacaaaggccacga
tttgttgcactaaaaaaacaaccatcttacattggaggacacgaaagtttagagttaaga
gattatcagttaaatgggttgaattggcttgctcactcatggtgcaaagggaatagctgt
attctcgcagatgaaatgggtctaggtaaaaccatacaaacaatttcttttctgaactat
ctgtttcacgaacatcaattgtatgggccattcttgttggttgtgccactttctaccttg
acgtcttggcaaagagagattcaaacctgggctcctcagatgaatgctgtagtttactta
ggagatataactagtagaaatatgataagaactcatgaatggatgcatccacagaccaaa
cgattgaaatttaacatactcttaacaacatatgaaattttgctaaaggataagtcattc
cttggtggtctgaattgggcattcataggagttgatgaagctcatcgtttaaaaaatgat
gactctcttctgtacaaaactttaatagactttaagtctaaccatcgtcttcttattacc
ggaacacctctgcaaaactctctcaaagagctttggtctttactgcacttcatcatgcca
gaaaagttttcttcatgggaagattttgaagaggagcatggcaaagggagagagtgtggt
tatgcaagtcttcacaaagaacttgaaccatttctgctgagaagagttaaaaaagatgta
gaaaagtccttacctgctaaagttgagcaaattctgagaatggaaatgagtgcattgcaa
aagcaatactacaagtggattttaaccaggaattataaagcccttagcaaaggttcaaaa
ggcagtacctcaggctttttgaacatcatgatggaactcaagaagtgttgcaaccattgc
tacctcattaaaccaccagatgataatgaattctataataaacaggaggccttacagcat
ttaatacgtagcagtgggaagctaatccttcttgacaagctactgattcgtctgcgagaa
cgtggcaacagagtcctgattttttcacagatggtaaggatgctggacatcctggcagaa
tatctgaaatatcgtcaatttccatttcagagactcgatggatcaataaaaggggaattg
aggaaacaagcactggatcattttaatgcagaaggatcagaggacttctgctttttactg
tctaccagagctggaggattaggtatcaacttggcatctgctgatacggtggttatattt
gattctgactggaatccacagaatgatctgcaagcacaggctagagcacatagaattgga
cagaagaaacaggttaatatttatcgactagtcacaaaaggatcagtagaagaagatatt
cttgaacgagccaagaaaaagatggtgttagatcatttagtaattcagagaatggacact
acagggaaaactgtgttacatacaggctctactccttcaagctcaacaccttttaataag
gaggagttgtcggcaattttaaagtttggtgctgaggaactttttaaagaacctgaagga
gaagaacaggagcctcaagaaatggatatagatgaaatattgaagagggctgaaactcgg
gaaaatgagccaggtccattaactgtaggagatgagttgctttcgcagttcaaggtggca
aacttctccaatatggatgaagatgatattgagttggagccagaaagaaattcaagaaat
tgggaagaaatcattccggaggtccagaggcgaagaatagaagaggaagaaagacaaaaa
gaacttgaagaaatatacatgcttccaagaatgagaaactgtgcaaaacagattagcttc
aatggcagtgaagggagacgcagtaggagtagaagatactctggatctgatagtgactcc
gtctcagaaagaaaaaggccaaaaaaacgtggaagaccacgaactattcctcgagaaaat
attaaaggatttagtgatgcagagataaggcggtttatcaagagttacaagaaatttggt
ggcccccttgagaggttagatgctgtagctagagatgctgagctagttgataaatcagag
acagacctcagacgtttgggagagcttgtacataatggatgcattaaagccttaaaggac
aattcatctggacaagaaagagcaggaggtagacttgggaaggttaaaggcccaacattc
cgaatctcaggagtgcaagtaaatgcaaagttagtcatctctcatgaagaagagttggca
ccattgcacaaatccattccttcagatccagaagaaagaaaaagatacgtcatcccatgc
cacactaaggctgctcattttgatatagactggggtaaggaagatgattccaatttgttg
ataggcatctatgaatatggttatggcagctgggaaatgataaaaatggatcctgatctc
agtttgacacagaagattttgcctgatgatccagataagaaaccccaggcaaagcagtta
cagacccgtgcagactacctcattaaattactgaataaagaccttgcgaggaaggaagca
caaaggcttgctggagcaggcaattcaaagaggaggaaaacaagaactaagaagaataaa
gtgctaaaggctgcaaaattaaaagaagaaataaaaagtgattcttcaccacaaccgtca
gaaaaatctgatgaagatgatgatgagaataacaaggatgagattgtttcagtgaaacat
ctgcataaaaaatttaaagcagaaaaagaaaatgaagaaaagcctgagccagatactggt
ataaagaaggaggctgaagaaaaaagagagacaaaagaaaaggaaaataagagggatttg
aaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaggatattaaagaa
aagagagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagagaag
gttaatgaaatcaaatctgaaaataaggaaaaaactaaaaaaattccattgctggatact
ccagttcatattactgcatctagtgaaccggttcctatatcagaagaatctgaagagcta
gatcagaaaacttttagtgtgtgcaaagaaagaatgagacctgtcaaggcagcattgaaa
cagcttgatcgaccagagaagggcctttctgaaagagaacagctagaacacactagacag
tgtcttatcaaaattggggatcatattactgagtgtctaaaggagtacacaaatcctgaa
caaattaaacagtggagaaaaaatttgtggatttttgtctctaagtttacagaatttgat
gccagaaagctacataaactgtataaacatgcaatcaaaaaacgtcaagagtctcagcaa
cacaacgatcagaatattagcagtcatgtgaatacgcatgtaattagaaatccagatgtg
gaaagactgaaggagaatacaaaccatgatgacagtagccgggacagctattcctctgat
agacatctgtcacaacaccacgatcatcataaggacaggcatcagggagatgcctacaag
aaaaatgactccaggaaaaggccttattcagccttcagcaatggaaaagatcacagagac
tgggaacactataaacaagacagcaggtactacagtgatagtaaacataggaagttagat
gactacaggagcagggaccacaggtcaagcctggaagggagtctaaaagacagccgggtt
catttggatcaccgttcccattcagaccacaggatacattcagatcaccgttcctcttcc
gagtacagccatcataaatctcccagagattataggtaccactcagactggcaaatggac
cacagagcttcaggtagtgccccaaggtcacccctggatcagagatctccttatgattca
agatctcccctcggtcacagatctccgtttgaacattcatcagatcacaaaaatacacct
gaacatacatggagtagccggaaaacataa
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integrated database retrieval system
