Agelaius tricolor (tricolored blackbird): 139600433
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Entry
139600433 CDS
T10815
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139600433 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139600433 (SKIC3)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
139600433 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_14
TPR_16
TPR_11
TPR_12
TPR_8
TPR_CcmH_CycH
TPR_17
TPR_9
ANAPC3
ARM_TT21_C
TPR_6
TPR_15
BTAD
TPR_5
Fis1_TPR_C
TPR_30
Retrotran_gag_2
TolB_N
TPR-S
TPR_20
Imm71
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
139600433
NCBI-ProteinID:
XP_071304686
LinkDB
All DBs
Position
Unknown
AA seq
1562 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKQYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPDQAK
GAYKKAIELEPNQLLAWQGLANLYEKPNQTDVKGDLADVYQKLLELYESGDKQKWCDVCN
KLVELYHQEKKYLEVAETWQKLIRMKQEEGAEKAELHQLWKKMIQLLKDSTRNQDNKTGQ
LLLTAFEHALHSADTVPGEDHQNLYKDFIQCLSKFPHEVGRLEKACDDMMALYPTMTYPL
EVLCLHFVQSGTLSEKALHCFSKLLEMDASSGPGIIGFGVKCLKENKYKEAVKSLTEGLQ
KTNQCPAAWYYLAEAQMKIHEHRNAVLSCNQALEALGTPEGPNLRWKNLVFQLKAETLIK
IADADAAEKAIKALEQIVDGSSDPVISALRGQAYLNKGLMDQASKVSQELLLSHPDLAEA
HALEGFIHYSQKNYEQAEKSFLNAIERKAGTAEYHQYLGLTYWFMGDETRKNKGKALTQF
LKAAKLDSYLGSAFCYLGNYYRDIAGDKSRARGCYKKAFELDETDEESGTAAVNLSVELG
DMDTALSILNEVTEKARPGTAKWAWLHRGLYYLRTGQPSQAVADLQAALRADPKDSNCWE
SLGEAYFNRGSYSTALKSFRKASELNPELVYSIYRAAALEQILGKYENAIATYQQILKKT
ENYVPALKGLGECYLMLARSALDNYLDRKAVDYIEQALAYFTRAVKHRPDVSCLWKLLGD
TCTSVHVISPAKVNVQVLGSLLSKNATKQVLTKNELLILGGRCYGRALKLMSLPSIWCDL
GINYYRQAEHLTAVGTDMNEISELLEKSLQCLKKAVRLDSKNHLFWNALGVVASCSAIGN
YALAQHSFIKSVQAEQINVVAWTNLGVLYLATGNIEQAHEAFKVAQSLEPSYLLCWIGQA
LIAETVGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDKANRNTEVYLYNIVQMNAI
PAAQVVLSKYTERNPDDASAFTMFGFLNEYLDLKQQAAYAYERAASLLKNSEDTEKYNTA
MQNYGRSLCALGRCDEAIEVYTSIPLTEFDGIVGLALAYFKKGLLEESIKAYEKALSVAE
SEKDKAHILTALAIIEYKLNKVDAAKTLLFKCSLKEPSTESLKALCTLGLVKQDATLATA
ALKELLKHEKGNDGIYERCLIASAVYALQGRNVAIQREVSKAIHSYPDNPALWSLLSRIV
PLYASKKPKGGAVAGSVAHTLDVNCGKEVLLNIAVNQLVAGCHMLEDKKNNPLKNIQKAI
HVCPDNPVAWAVLMAACHAENTVVCLNNTEPKRTGLEMTLMSTVSAKTGESNLPHNYVRT
LEDWCLCQAITSLGETGKLSEAEALCNKGLKSCPEHPALFLLLRQVQCKQLLQSHKELPD
NILEELRKTVMSSSSSAAAWQWLAKIYQSQRMMTGAEMCYRKSLQLASQQGSWNGKLSSL
LRLAMLALEICMANVSNEHWPSLVQEATTEALKLSPSPLAALLQALLQYNHKMGARETRR
MLERIVYQPANPETIVSVARWYLLQHLYAKDDCELIDVLIENAKANGDVRALELNEKLSS
SA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaggaggtgaaggcagcattaaagagtgctagagatgcaataagaaataaa
cagtacaaggaggccttaaaacattgcaaggcagtcttgaagcaagaaaaaaataactac
aatgcttgggtattcattggcctggcagctgctgagttagagcagcctgatcaggccaaa
ggagcatacaagaaggctattgaacttgaaccaaaccagttactggcatggcagggatta
gcaaatttgtatgagaaaccgaaccaaacagatgtcaaaggagacttagcagatgtgtac
caaaaactcttggaactttatgaaagtggtgacaagcagaaatggtgtgatgtatgtaac
aagcttgtggaactataccatcaagaaaagaaatatttagaggtggctgaaacttggcag
aagctaataaggatgaaacaggaggaaggtgcagaaaaggcagagcttcatcagctttgg
aagaagatgatccagttactgaaagacagtacaaggaaccaggataataagactgggcag
ttgcttttgactgcatttgaacatgcgctgcactctgctgacactgttcctggtgaagac
caccaaaatctttacaaagacttcatacagtgcttgtcaaaatttcctcatgaagtcggt
aggttggaaaaggcttgtgatgatatgatggctttgtatcctactatgacttaccctttg
gaagtactttgcttgcactttgttcagtcaggtactttgtcagaaaaggccctgcactgt
ttttctaaacttttggagatggatgcaagcagtggtccaggcatcattggttttggtgta
aaatgcctcaaagaaaataaatacaaggaggctgttaagagtcttactgaaggtttgcag
aagactaaccagtgtccagcagcatggtattatctagcagaggcacagatgaaaatccat
gaacacaggaacgctgtcctgtcctgcaatcaagctcttgaggctcttggaactcctgag
ggtcctaatcttcggtggaagaaccttgtctttcagttgaaagcagagactttgattaaa
atagctgatgctgatgctgcagaaaaagccattaaagcacttgagcagattgtagatgga
agcagtgatccagtgatttcagctctcaggggtcaggcttatctaaacaagggtttaatg
gatcaggcttcaaaggtttcacaagagcttctcctgtcccaccctgatctggctgaggcc
catgctctagagggtttcatccattattcccaaaagaactatgagcaggcagaaaaaagt
tttctaaatgctattgaaagaaaagctggaactgcagagtatcatcagtacctggggctt
acatactggttcatgggtgatgagacaagaaaaaacaaagggaaagcactcactcagttc
ttgaaggctgcaaaattggacagctacttgggaagtgccttttgttatctaggtaactac
tacagagacattgctggagacaaaagcagagctcgtggttgctataaaaaggcttttgaa
ctggatgagacagatgaggaatctggaacagcagctgtcaatttaagtgtggaacttgga
gacatggacactgctctgtcaatcctgaatgaggtaactgaaaaagcaagacctggtaca
gcaaaatgggcctggcttcatcgtggactttactacttgagaactggtcagccgtcacaa
gcagtggctgatttgcaggcagctctcagggctgatccaaaggattccaactgctgggag
tctctaggggaggcttacttcaacagaggtagctactcaacagctctgaaatccttcagg
aaagcaagtgagctgaacccagagcttgtgtacagcatttacagagctgcagcacttgag
cagattctaggcaaatacgaaaatgctatagctacctatcaacagatattaaagaagaca
gaaaactatgtgcctgcactgaaaggactcggtgagtgttatctcatgctggcaagatca
gcccttgataactatttggataggaaggctgtggattacatagagcaggcccttgcatat
tttacaagggcagtaaagcaccgtcctgatgtatcttgcctctggaaactgttaggagat
acctgtactagtgtgcatgttatttcaccagccaaagtgaatgttcaagtactaggatct
cttctgagtaaaaatgcaaccaaacaggtgctgacgaaaaatgagcttctcatactggga
ggaaggtgttatggcagagctttaaaactgatgtctttgccgagcatatggtgtgatctt
ggaataaattattatcgccaagcggagcacctcacagcagtgggcacggacatgaatgag
atcagtgaactgttagagaagtctttgcagtgtctcaaaaaagctgtgagacttgacagc
aaaaatcatcttttttggaatgcacttggtgtagttgcttcttgtagtgctattgggaat
tatgctcttgcacaacattcgttcatcaaatctgttcaagctgagcaaattaatgttgtt
gcctggaccaacttgggggttttgtatctggcaactggaaacattgagcaagctcatgaa
gccttcaaggtagcccagtctctggaaccttcttacctcttgtgttggattggacaggct
cttattgcagagactgtaggcagctatgataccatggatctcttcaggcacacaactgaa
ctcagtatgcatactgagggagcaaaaggctatgcccactgggtatgttcaacgctgcag
gataaagccaacagaaacactgaagtgtatctgtacaacattgttcaaatgaatgctata
ccagcagcccaagtggtcttgagcaaatatacagaaagaaatccagatgatgcttctgct
ttcacaatgtttgggtttttgaatgagtatctggatctaaaacagcaggcagcctatgcc
tatgagagggcagcttcactgctgaaaaactcagaggatactgagaaatacaatacagca
atgcaaaactatggcaggtcactatgtgctcttgggcggtgtgatgaggccattgaagtt
tacacatcaatacccctaacagagtttgatggcattgtggggctagcgttagcttacttc
aagaaaggactcttagaagaaagtatcaaagcctatgaaaaagccttgtctgttgctgag
tctgaaaaagataaagcacatatcctgactgccttggcaataatagaatataaactgaac
aaagtggatgctgcaaagacactgctgtttaaatgctcattaaaggaacctagtacggaa
agtctgaaggctttgtgcacactgggattggtaaagcaggatgcaacacttgcaacagca
gccctaaaagaattactgaagcatgaaaaagggaatgatgggatttatgagaggtgtctc
attgcatctgctgtttatgcattacaaggtagaaatgtagcaatccagagggaagtctcc
aaagcaatacacagttaccctgataatcctgccctttggtctcttctgtctcgaatagtt
ccactgtatgcatcaaaaaagccaaaaggaggagctgtggcaggaagtgttgcacataca
cttgatgtaaactgtggaaaggaagtcctgctgaacattgcagttaatcagttggtagca
ggatgccacatgttagaagataagaaaaacaatcctctgaaaaatattcagaaggccatc
catgtctgtccagataatcctgttgcttgggcagtgctaatggcagcctgtcatgctgaa
aacactgttgtctgtctaaacaacactgaaccaaaacgaacaggcctagagatgacactt
atgtctacagtttcagccaaaactggagaaagtaatcttccacataattatgtccgtact
cttgaagactggtgtctgtgtcaagctattaccagtctaggggagactggtaaactgtca
gaagctgaagctctttgtaacaagggtttaaaaagctgccctgagcacccagctctattt
ttgcttttgagacaagttcagtgtaagcagctgttgcagtctcacaaagaacttccagac
aacatcctggaggaacttcgcaagacagtcatgtccagttcatcctcagctgcagcctgg
caatggctggcgaaaatatatcagtctcagagaatgatgactggagcagagatgtgttac
agaaagagtctgcagttggcatcacagcagggcagctggaacgggaagttatccagtctg
ctcaggctagctatgctcgcactggaaatctgcatggctaatgtctcaaatgagcactgg
ccatccttggtacaggaggcaacgactgaagctttgaaactttctccttcccctttggca
gctctgcttcaagccctgctacaatataatcacaaaatgggagcaagggaaactcggcga
atgttggagagaattgtttaccagccagccaatccagaaaccatagtgtcagtggcacgc
tggtacctcctgcaacatctgtatgccaaagatgattgtgaattaatagatgtgcttata
gaaaatgccaaagctaatggagatgttagagctctggaactcaatgagaaattatcatca
agtgcctag
DBGET
integrated database retrieval system
